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Bacilli
Bacilli blocs
- Lien tableur: bacilli blocs
- Légende:
- - 23s': possible 23S ribosomal RNA but does not have good blast hits on one or both of the ends.
- - 23s°: 23S ribosomal RNA rRNA prediction is too short
- - 16s': possible 16S ribosomal RNA but does not have good blast hits on one or both of the ends.
- - 16s°: 16S ribosomal RNA rRNA prediction is too short
| lien | blocs | 16s | total aas | avec | sans | total page | Bc001-25 | Notes | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16s23s5s | atcgca | autres | avant | |||||||||
| bc001 | 16s23s5s | 4 | 60 | 40 | 20 | sans | 19 | 4 | avant | |||
| 16atcgca235-aac-acc | 1-3 | 3 | 2 | 3 | 3*cgt gga 16s23s5s atgf gac | |||||||
| 16atcgca235-22aas | 4-8 | 3 | ||||||||||
| 16s23s5s-12aas | 9-23 | 13 | 2 | 1-3 | ||||||||
| 24-43 | 2*16atcgca235-aac-acc | |||||||||||
| bc002 | 16s23s5s-tca | 6 | 65 | 1 | 64 | 49 | total | 38 | 8 | 0 | 3 | 2*16s23s5s-atgf-gac |
| 5*16s23s5s | 16s23s5s-tca | |||||||||||
| bc004 | 2*16s23s5s | 6 | 56 | 28 | 28 | autres incomplets | ||||||
| 16atcgca235-aac-acc | 16s°atcgca235 | |||||||||||
| 16s23s5s-atgf-gac | 16s°23s5s-16 aas | |||||||||||
| 2*16s23s5s-13,9 aas | 16s°atcgca235 | |||||||||||
| bc008 | 2*16atcgca235 | 10 | 95 | 68 | 27 | |||||||
| 2*16s23s5s | ||||||||||||
| 5*16s23s5s-21,16,9,9,5 aas | ||||||||||||
| cgt gga 16s23s5s atgf gac | ||||||||||||
| bc014 | 4*16s23s5s | 8 | 89 | 59 | 30 | |||||||
| cgt-gga-16s23s5s-atgf-gac | ||||||||||||
| 2*16s23s5s-9,7 aas | ||||||||||||
| 16atcgca235-21 aas | ||||||||||||
| 16s°atcgca235 | ||||||||||||
| 16s°23s5s-16 aas | ||||||||||||
| bc015 | 3*16s23s5s | 9 | 89 | 52 | 37 | |||||||
| 16atcgca235 | ||||||||||||
| 4*16s23s5s-21,16,9,7 aas | ||||||||||||
| 16s23s5s-atgf-gac | ||||||||||||
| 16s°atcgca235 | ||||||||||||
| bc025 | 2*16s23s5s | 6 | 70 | 41 | 29 | |||||||
| 16atcgca235 | ||||||||||||
| cgt-gga-16s23s5s-atgf-gac | ||||||||||||
| 2*16s23s5s-21,16 aas | 49 | |||||||||||
| lien | blocs | 16s | total aas | avec | sans | total page | Bc029-74 | Notes | ||||
| bc029 | 4*16s23s5s | 11 | 112 | 98 | 14 | 16s23s5s | atcgca | autres | avant | |||
| 2*16atcgca235 | sans | 33 | 6 | 1 | avant | |||||||
| 4*16s23s5s-20,19,11,9 aas | 1-3 | 5 | 3 | 3*33,12,11aas-16s23s5s-atgf-gac | ||||||||
| 33aas-16s23s5s-atgf-gac | 4-8 | 1 | 13aas-16s23s5s | |||||||||
| 9-23 | 22 | 2 | ||||||||||
| bc034 | 5*16s23s5s | 10 | 94 | 81 | 13 | 24-43 | 1-3 | |||||
| 16atcgca235-15aas | 73 | total | 61 | 8 | 0 | 4 | 3*16s23s5s-atgf-gac | |||||
| 3*16s23s5s-22,20,9aas | 2*16s23s5s-aac-acc | |||||||||||
| 11aas-16s23s5s-atgf-gac | ||||||||||||
| bc063 | 16s23s5s | 7 | 75 | 45 | 30 | |||||||
| 2*16atcgca235 | ||||||||||||
| 16s23s5s-aac-acc | ||||||||||||
| 16s23s5s-atgf-gac | ||||||||||||
| 2*16s23s5s-21,16 aas | ||||||||||||
| bc065 | 3*16s23s5s | 8 | 80 | 50 | 30 | |||||||
| 16s23s5s-atgf-gac | ||||||||||||
| 16s23s5s-aac-acc | ||||||||||||
| 3*16s23s5s-21,16,9 aas | ||||||||||||
| bc066 | 8*16s23s5s | 13 | 95 | 68 | 27 | |||||||
| 4*16s23s5s-22,19,15,8 aas | ||||||||||||
| 12aas-16s23s5s-atgf-gac | ||||||||||||
| bc067 | 7*16s23s5s | 10 | 83 | 43 | 40 | |||||||
| 16atcgca235-9aas | ||||||||||||
| 2*16s23s5s-16,16aas | ||||||||||||
| bc074 | 5*16s23s5s | 14 | 118 | 94 | 24 | |||||||
| 16s23s5s-atgf-gac | ||||||||||||
| 2*16atcgca235 | ||||||||||||
| 5*16s23s5s-22,20,15,9,9 aas | ||||||||||||
| 13aas-16s23s5s | 73 | |||||||||||
| lien | blocs | 16s | total aas | avec | sans | total page | Bc090-244 | Notes | ||||
| bc090 | 7*16s23s5s | 13 | 95 | 83 | 12 | 16s23s5s | atcgca | autres | avant | |||
| 16atcgca235 | sans | 35 | 13 | avant | ||||||||
| 4*16s23s5s-22,20,15,9 aas | 1-3 | 1 | 6 | 5*(3*12),11,10aas-16s23s5s-atgf-gac | ||||||||
| 11aas-16s23s5s-atgf-gac | 4-8 | 3 | 1 | cgt-gga-16s23s5s-atgf-gac | ||||||||
| 9-23 | 26 | |||||||||||
| bc097 | 5*16s23s5s | 13 | 107 | 93 | 14 | 24-43 | 1-3 | |||||
| 2*16atcgca235 | 85 | total | 65 | 14 | 0 | 6 | 16s23s5s-gaa | |||||
| 12aas-16s23s5s-atgf-gac | ||||||||||||
| 5*16s23s5s-22,20,15,9,9aas | ||||||||||||
| bc125 | 16s23s5s | 12 | 123 | 107 | 16 | |||||||
| 2*16atcgca235 | ||||||||||||
| suite3-16s23s5s | ||||||||||||
| 10aas-16s23s5s-atgf-gac | ||||||||||||
| 7*16s23s5s-21,16,14,12,10,9,9 | ||||||||||||
| bc147 | 3*16s23s5s encadrés | 9 | 86 | 60 | 26 | |||||||
| 2*16atcgca235 | ||||||||||||
| cgt-gga-16s23s5s-atgf-gac | ||||||||||||
| 3*16s23s5s-21, 16, 9, 6aas | ||||||||||||
| bc158 | 5*16s23s5s | 14 | 142 | 93 | 49 | |||||||
| 2*16atcgca235 | ||||||||||||
| suite2-16s23s5s | ||||||||||||
| 5*16s23s5s-22,20,15,9,9aas | ||||||||||||
| 12aas-16s23s5s-atgf-gac | ||||||||||||
| bc165 | 10*16s23s5s | 15 | 78 | 59 | 19 | |||||||
| 16s23s5s-gaa | ||||||||||||
| 3*16s23s5s-20,15,9 | ||||||||||||
| 12aas-16s23s5s-atgf-gac | ||||||||||||
| bc244 | 4*16atcgca235 | 9 | 98 | 26 | 72 | |||||||
| 16atcgca235-5aas | ||||||||||||
| 2*16s23s5s dont un encadré ici | ||||||||||||
| 2*16s23s5s-6, 5aas | 85 | |||||||||||
| lien | blocs | 16s | total aas | avec | sans | total page | Bc328-656 | Notes | ||||
| bc328 | 2*16s23s5s dont un encadré ici | 67 | 50 | 17 | 16s23s5s | atcgca | autres | avant | ||||
| 2*16s23s5s-21,9 | 6 | sans | 18 | 2 | 1 | 2 | avant | |||||
| 16atcgca235-14aas | 1-3 | 1 | 1 | 4 | 1 | 5s-8aas-16s-atc-235 | ||||||
| 16atcgca235-aac-acc | 4-8 | 1 | 1 | 2 | ctc-gga-16s23s5s | |||||||
| 9-23 | 15 | 2 | 6 | 11aas-16s23s5s-atgf-gac | ||||||||
| bc384 | 5*16s23s5s | 14 | 175 | 138 | 37 | 24-43 | 1 | |||||
| 9*16s23s5s-23 22 19 17 | 58 | total | 35 | 7 | 13 | 3 | 1-3 | |||||
| 16 12 11 9 9 aas | 16atcgca235-aac-acc | |||||||||||
| 16s23s5s-aac-acc | ||||||||||||
| bc393 | 7*16s23s5s | 13 | 165 | 73 | 92 | 2*16-gca-235-aac | ||||||
| 16s-gca-235 | 2*16-gca-235-aac-cgt | |||||||||||
| 16s-5s-atcgca-23s-8aas | ||||||||||||
| 16s-5s-atcgca-23s-5s-11aas | autres | |||||||||||
| 3*16s23s5s-11, 17, 21 aas | 16s-gca-235 | |||||||||||
| 16s-5s-atcgca-23s-8aas | ||||||||||||
| bc413 | 16atcgca235 | 5 | 63 | 47 | 16 | 16s-5s-atcgca-23s-5s-11aas | ||||||
| 16atcgca-235-26aas | ||||||||||||
| 16s23s5s-6aas | 2*16-gca-235-aac | |||||||||||
| 5s-8aas-16s-atc-235 | 5*16-gca-235-17,15,12,9,4 aas | |||||||||||
| ctc-gga-16s23s5s | 2*16-gca-235-aac-cgt | |||||||||||
| 23s°5s | 3*16s-gca-235-17, 12, 7 aas | |||||||||||
| bc499 | 2*16-gca-235-aac | 7 | 80 | 66 | 14 | 5s en trop | ||||||
| 5*16-gca-235-17,15,12,9,4 aas | 16s-5s-atcgca-23s-5s-11aas | |||||||||||
| 23s°5s | ||||||||||||
| bc655 | 2*16-gca-235-aac-cgt | 5 | 59 | 45 | 14 | 5s-8aas-16s-atc-235 | ||||||
| 3*16s-gca-235-17, 12, 7 aas | ||||||||||||
| bc656 | 4*16s23s5s | 8 | 56 | 30 | 26 | |||||||
| 16s23s5s-aac-acc | ||||||||||||
| 16atcgca235 | ||||||||||||
| 11aas-16s23s5s-atgf-gac | ||||||||||||
| 16s23s5s-13aas | 58 | |||||||||||
| lien | blocs | 16s | total aas | avec | sans | total page | Bc657-660 | Notes | ||||
| bc657 | 16s23s5s | 5 | 62 | 36 | 26 | 16s23s5s | atcgca | autres | avant | |||
| 16s23s5s-aac | sans | 7 | 1 | avant | ||||||||
| 2*16s-gca-235-25, 8aas | 1-3 | 2 | 1 | 2 | 12aas-16s23s5s-atgf-gac | |||||||
| 16s23s5s-12aas | 4-8 | 1 | 2 | 1 | gga-16atcgca235-gta | |||||||
| 9-23 | 3 | 2 | ||||||||||
| bc658 | 16s-5s-23s | 5 | 61 | 58 | 3 | 24-43 | 1 | 1-3 | ||||
| 16s-5s-23s-atgf-ctc-ctg | 23 | total | 13 | 6 | 2 | 2 | 16s23s5s-aac | |||||
| 2*16s-5s-atcgca-23s-9,5aas | 16s-5s-23s-atgf-ctc-ctg | |||||||||||
| 16s-5s-23s-14aas | 16atcgca235-aac-acc | |||||||||||
| bc659 | 4*16s23s5s | 7 | 54 | 32 | 22 | autres | ||||||
| 16atcgca235-aac-acc | 16s-5s-23s-14aas | |||||||||||
| 12aas-16s23s5s-atgf-gac | 2*16s-5s-atcgca-23s-9,5aas | |||||||||||
| 16s23s5s-14aas | 2*16s-gca-235-25, 8aas | |||||||||||
| bc660 | 16atcgca235 | 6 | 75 | 38 | 37 | 5s en trop | ||||||
| 16s23s5s | 16atcgca235-4aas-5s-aac | |||||||||||
| 16s23s5s-6aas:gta-gac-tgg-cac-ttg-cca | ||||||||||||
| 2*16atcgca235-17aas, 4aas-5s-aac | ||||||||||||
| gga-16atcgca235-gta | ||||||||||||
| 23 | ||||||||||||
| lien | blocs | 16s | total aas | avec | sans | total pages | Total | |||||
| 16s23s5s | atcgca | autres | avant | |||||||||
| sans | 112 | 26 | 1 | 3 | ||||||||
| 1-3 | 12 | 4 | 4 | 15 | ||||||||
| Moyenne | 88 | 59 | 29 | 4-8 | 9 | 4 | 3 | 0 | ||||
| ecartype | 30 | 28 | 19 | 9-23 | 79 | 8 | 6 | 0 | ||||
| max | 175 | 138 | 92 | 24-43 | 0 | 1 | 1 | 0 | ||||
| min | 54 | 1 | 3 | 288 | total | 212 | 43 | 15 | 18 |
Bacilli notes
- Lien tableur: bacilli notes
| avant | 1-3 | |
| 33,5*12,3*11,10aas-16s23s5s-atgf-gac | 4*16atcgca235-aac-acc | |
| 4*cgt-gga-16s23s5s-atgf-gac | 2*16-gca-235-aac | |
| 13aas-16s23s5s | 2*16-gca-235-aac-cgt | |
| 5s-8aas-16s-atc-235 | ||
| ctc-gga-16s23s5s | 5*16s23s5s-atgf-gac | |
| 3*16s23s5s-aac-acc | ||
| gga-16atcgca235-gta | 16s23s5s-gaa | |
| 16s23s5s-tca | ||
| autres | 16s23s5s-aac | |
| 16s-gca-235 | 16s-5s-23s-atgf-ctc-ctg | |
| 2*16-gca-235-aac | ||
| 2*16-gca-235-aac-cgt | autres incomplets | |
| 9*16-gca-235-2*17,15,2*12,9,8,7,4 aas | 16s°atcgca235 | |
| 16s-gca-235-25aas | 16s°23s5s-16 aas | |
| 3*16s-5s-atcgca-23s-9,8,5aas | 16s°atcgca235 | |
| 16s-5s-atcgca-23s-5s-11aas | ||
| 16s-5s-23s-14aas | 5s en trop | |
| 16atcgca235-4aas-5s-aac | ||
| zéro cds | 16s-5s-atcgca-23s-5s-11aas | |
| 5s-8aas-16s-atc-235 | ||
| incomplets | 23s°5s |
Bacilli typage
bacilli blocs intégrés
- Lien tableur: bacilli blocs intégrés
| avant inversé | Total intégré | ||||||
| 16s23s5s | 16s23s5s | atcgca | gca | autres | atc | total | |
|---|---|---|---|---|---|---|---|
| 0 | sans | 112 | 26 | 1 | *0 | 139 | |
| 1 | 1-3 | 13 | 5 | 4 | *0 | 22 | |
| 4 | 4-8 | 13 | 4 | 3 | *2 | 1 | 21 |
| 10 | 9-23 | 89 | 8 | 6 | *3 | 103 | |
| 1 | 24-43 | 1 | 1 | 1 | *0 | 3 | |
| 16 | total | 228 | 44 | 15 | *5 | 1 | 288 |
| 0 | Dont 16s5s-*-23s | 1 | 4 | 0 | *5 | 5 |
bacilli blocs 1-3
- Lien tableur: bacilli blocs 1-3
| 1-3 après/ap | Total |
| aac | 12 |
| acc | 7 |
| atgf | 6 |
| gac | 5 |
| cgt | 2 |
| ctc | 1 |
| ctg | 1 |
| gaa | 1 |
| tca | 1 |
| 36 | |
| aac-acc | 7 |
| atgf-gac | 5 |
clostridia
clostridia blocs
- Lien tableur: clostridia blocs
- Légende: NCBI # gtRNAdb, différence entre
- - 16s, nombre de 16s taas, total tRNAs avec, avec rRNA sans, sans rRNA tpage, total de la page correspondant à une en-tête av16s, avec des tRNAs avant 16s. Pour contrôle, tpage plus le nombre d' incomplets de Notes doit être égal au 16s de fin d'en-tête
- - 23s': possible 23S ribosomal RNA but does not have good blast hits on one or both of the ends.
- - 23s°: 23S ribosomal RNA rRNA prediction is too short
- - 16s': possible 16S ribosomal RNA but does not have good blast hits on one or both of the ends.
- - 16s°: 16S ribosomal RNA rRNA prediction is too short
| lien | blocs | 16s | taas | avec | sans | tpage | Cd001-32 | Notes 1 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| cd001 | 3*16s23s5s | 5 | 62 | 21 | 41 | 16s23s5s | atcgca | gcaatc | gca | atc | autres | av16s | |||
| 16s-gcaatc-235-6aas | sans | 15 | 1 | 2 | 2 | 2 | avant | ||||||||
| 5aas-16s-gcaatc-235-6aas | 1-3 | 7 | 1 | 1 | 1 | 5aas-16s-gcaatc-235-6aas | |||||||||
| 5s | 4-8 | 1 | 1 | 1 | 3 | agc-16s5s23s-6aas | |||||||||
| 9-23 | 5 | 2 | tca-tcc-16s5s23s-5aas | ||||||||||||
| cd002 | 16atcgca235 | 5 | 67 | 34 | 33 | 24-43 | |||||||||
| 16atcgca235-6aas | 45 | total | 28 | 2 | 4 | 5 | 3 | 0 | 3 | autres | |||||
| 3*16s23s5s-12,9,4 aas | 16s5s-atc-23s | ||||||||||||||
| 16s5s-gca-23-aac-gaa-tgc | |||||||||||||||
| cd003 | 3*16s23s5s | 10 | 110 | 83 | 27 | 16s5s23s-gac-aca | |||||||||
| 16-gca-2355 | 16s5s23s | ||||||||||||||
| 16-atc-235 | |||||||||||||||
| 3*16s23s5s-22,13,9aas | 1-3 | ||||||||||||||
| 2*16-gca-235-22,13aas | 16s-atc-23s-aac | ||||||||||||||
| 16s-gcaatc-23s5s-ttc-tgc | |||||||||||||||
| cd011 | 16s5s23s | 6 | 51 | 21 | 30 | 16s5s-gca-23-aac-gaa-tgc | |||||||||
| 16s5s23s-gac-aca | 16235-aaa-cds-5s-aaa | ||||||||||||||
| 16s5s-atc-23s | 16s5s23s-gac-aca | ||||||||||||||
| agc-16s5s23s-6aas | 2*16s23s5s-atgi-gca | ||||||||||||||
| tca-tcc-16s5s23s-5aas | 16s23s5s-ttc-gac-gaa | ||||||||||||||
| 16s5s-gca-23-aac-gaa-tgc | 2*16s23s-aac-5s | ||||||||||||||
| cd013 | 16s23s5s | 3 | 52 | 4 | 48 | différents | |||||||||
| 2*16-gca-atc-235 | 2*16s23s-aac-5s | ||||||||||||||
| 16235-aaa-cds-5s-aaa | |||||||||||||||
| cd032 | NCBI # gtRNAdb | 93 | 18 | 75 | |||||||||||
| 7*16s23s5s | 16 | cds | |||||||||||||
| 2*16s23s5s-atgi-gca | 16235-aaa-cds-5s-aaa | ||||||||||||||
| 16s23s5s-ttc-gac-gaa | |||||||||||||||
| 2*16s23s-aac-5s | 5s en trop | ||||||||||||||
| 16s-atc-23s-aac | 16235-aaa-cds-5s-aaa | ||||||||||||||
| 16s-gca-23s5s | 16-gca-2355 | ||||||||||||||
| 16235-aaa-cds-5s-aaa | 5s-ttc | ||||||||||||||
| 16s-gcaatc-23s5s-ttc-tgc | 5s | ||||||||||||||
| 5s-ttc | 45 | ||||||||||||||
| lien | blocs | 16s | taas | avec | sans | tpage | Cd045-59 | Notes 2 | |||||||
| cd045 | 3*16s23s5s | 10 | 87 | 22 | 65 | 16s23s5s | atcgca | gcaatc | gca | atc | autres | av16s | |||
| 16s23s5s-atgi-gca | sans | 8 | 4 | 2 | 1 | avant | |||||||||
| 16s23s5s-aaa | 1-3 | 15 | 1 | 2 | 1 | 1 | gca-atc-gga-16s23s5s | ||||||||
| 16s23s-aac-5s-aac | 4-8 | 1 | 5s-atgi-gca-16-gca-atc-235-aac-aac | ||||||||||||
| 16s23s5s-ttc-5s-ttc-aaa | 9-23 | ||||||||||||||
| 16s-gca-atc-235-6aas | 24-43 | 1-3 | |||||||||||||
| gca-atc-gga-16s23s5s | 36 | total | 23 | 0 | 2 | 6 | 3 | 0 | 2 | 3*16s23s5s-aaa | |||||
| 16s-gca-atc-23s-aac | 3*16s23s5s-aac | ||||||||||||||
| 2*16s23s5s-ttc | |||||||||||||||
| cd047 | 16s23s5s | 5 | 53 | 6 | 47 | 16s23s5s-ggc | |||||||||
| 16s23s5s-aac | 16s23s5s-ttc-tgc | ||||||||||||||
| 16s23s5s-ttc | 16s23s5s-aac-aac | ||||||||||||||
| 16s23s5s-aac-aac | 2*16s23s5s-atgi-gca | ||||||||||||||
| 16s5s-atgi-gca | 16s23s-aac-5s-aac | ||||||||||||||
| 16s23s5s-ttc-5s-ttc-aaa | |||||||||||||||
| cd055 | 3*16-gca-235 | 8 | 65 | 9 | 56 | 2*16-gca-235-aac | |||||||||
| 16-gca-235-aac | 16-atc-235-tgg | ||||||||||||||
| 16-atc-235-tgg | 16-gca-atc-235-aac | ||||||||||||||
| 16-atc-235 | |||||||||||||||
| 16s23s5s-aac | incomplets | ||||||||||||||
| 16s23s5s | 16s5s-atgi-gca | ||||||||||||||
| 16s-gca-atc-23s-aac | |||||||||||||||
| cd057 | 16s23s5s | 9 | 80 | 17 | 63 | ||||||||||
| 16s23s5s-atgi-gca | différents | ||||||||||||||
| 16s23s5s-ggc | 16s23s-aac-5s-aac | ||||||||||||||
| 2*16s23s5s-aaa | 16s23s5s-ttc-5s-ttc-aaa | ||||||||||||||
| 16s23s5s-ttc | |||||||||||||||
| 16s23s5s-ttc-tgc | 5s en trop | ||||||||||||||
| 16-gca-atc-235-aac | 16s23s5s-ttc-5s-ttc-aaa | ||||||||||||||
| 5s-atgi-gca-16 – | 5s-atgi-gca-16-gca-atc-235-aac-aac | ||||||||||||||
| gca-atc-235-aac-aac | |||||||||||||||
| cd059 | 2*16s23s5s | 6 | 59 | 5 | 54 | ||||||||||
| 16-atc-235 | |||||||||||||||
| 16-gca-235 | |||||||||||||||
| 16s23s5s-aac | |||||||||||||||
| 16-gca-235-aac | 38 | ||||||||||||||
| lien | blocs | 16s | taas | avec | sans | tpage | Cd060-64 | Notes 3 | |||||||
| cd060 | 16s23s5s | 7 | 63 | 10 | 53 | 16s23s5s | atcgca | gcaatc | gca | atc | autres | av16s | |||
| 16s23s5s-atgi-gca | sans | 8 | 1 | avant | |||||||||||
| 16-gca-atc-235-atgi-gca | 1-3 | 16 | 2 | 2 | 1 | atgf-16s23s5s | |||||||||
| 16-atc-235-ttc | 4-8 | 1 | 1 | atgi-gca-16s23s5s-aac | |||||||||||
| 16s23s5s-aac | 9-23 | ||||||||||||||
| 16s23s5s-aaa | 24-43 | 1-3 | |||||||||||||
| 16s23s | 32 | total | 25 | 0 | 3 | 0 | 2 | 0 | 2 | 16s23s5s-atgi | |||||
| 2*16s23s5s-aac | |||||||||||||||
| cd062 | 2*16s23s5s | 9 | 74 | 13 | 61 | 2*16s23s5s-ttc | |||||||||
| 16s23s5s-atgi | 5*16s23s5s-aaa | ||||||||||||||
| 16s23s5s-aaa | 3*16s23s5s-atgi-gca | ||||||||||||||
| 16s23s5s-ttc | 16s23s-aac-5s-aac | ||||||||||||||
| 16-gca-atc-235-aac | 16s23s5s-atgi-gca-aac | ||||||||||||||
| atgf-16s23s5s | 16s23s5s-ttc-5s-ttc-aaa | ||||||||||||||
| 16s23s5s-atgi-gca-aac | 16-atc-235-ttc | ||||||||||||||
| 16-gca-atc-23s | 16-atc-235-ttc-tgc | ||||||||||||||
| 5s-ttc | 16-gca-atc-235-aac | ||||||||||||||
| 16-gca-atc-235-atgi-gca | |||||||||||||||
| cd063 | 4*16s23s5s | 10 | 81 | 18 | 63 | ||||||||||
| 16s23s-aac-5s-aac | incomplets | ||||||||||||||
| 16-gca-atc-23-aac | 16s23s | ||||||||||||||
| 16s23s5s-ttc-5s-ttc-aaa | 16-gca-atc-23s | ||||||||||||||
| 16s23s5s-aaa | 16-gca-atc-23-aac | ||||||||||||||
| 16s23s5s-atgi-gca | |||||||||||||||
| 16-gca-atc-235-6 aas | différents | ||||||||||||||
| 16s23s5s-ttc-5s-ttc-aaa | |||||||||||||||
| cd064 | 16s23s5s | 9 | 77 | 17 | 60 | 16s23s-aac-5s-aac | |||||||||
| 16s23s5s-atgi-gca | |||||||||||||||
| 2*16s23s5s-aaa | 5s en trop | ||||||||||||||
| 16s23s5s-ttc | 5s-ttc | ||||||||||||||
| 16-atc-235-ttc-tgc | 16s23s5s-ttc-5s-ttc-aaa | ||||||||||||||
| 16s23s5s-aac | |||||||||||||||
| atgi-gca-16s23s5s-aac | |||||||||||||||
| 16s23s5s-5aas | 35 | ||||||||||||||
| lien | blocs | 16s | taas | avec | sans | tpage | Cd067-92 | Notes 4 | |||||||
| cd067 | 2*16s23s5s-atc-gca | 10 | 96 | 16 | 80 | 16s23s5s | atcgca | gcaatc | gca | atc | autres | av16s | |||
| 16s23s5s-gaa, aaa, aac, ttc | sans | 9 | 5 | 0 | 5 | 1 | 1-3 | ||||||||
| 16-gca-atc-235-ttc, aaa | 1-3 | 16 | 4 | 3*16s23s5s-aaa | |||||||||||
| 16-gca-atc-23-aac | 4-8 | 3*16s23s5s-ttc | |||||||||||||
| 16-gca-atc-235 – | 9-23 | 4*16s23s5s-aac | |||||||||||||
| aac-5s-ttc-tgc | 24-43 | 16s23s5s-gaa | |||||||||||||
| 40 | total | 25 | 5 | 4 | 5 | 0 | 1 | 0 | 2*16s23s5s-atgi-gca | ||||||
| cd071 | 3*16s23s5s-aac | 9 | 66 | 12 | 64 | 3*16s23s5s-atc-gca | |||||||||
| 16-gca-atc-235-ttc | 16-gca-atc-235-aaa | ||||||||||||||
| 16s23s5s-ttc, aaa | 16-gca-atc-23-aac | ||||||||||||||
| 16s23s5s | 2*16-gca-atc-235-ttc | ||||||||||||||
| 16s23s5s-atc-gca | 16-gca-atc-235-aac-5s-ttc-tgc | ||||||||||||||
| 16s23s5s-atgi-gca | |||||||||||||||
| incomplets | |||||||||||||||
| cd079 | 16s23s5s-atgi-gca | 4 | 53 | 9 | 44 | 8aas-16s | |||||||||
| 16s23s5s-aaa | 16s-atc-23s | ||||||||||||||
| 16s23s5s-ttc | 16-gca-atc-23-aac | ||||||||||||||
| 16s-atc-23s | |||||||||||||||
| 16s°-atc-235-atgi-gca | autres incomplets | ||||||||||||||
| 23s5s-aaa | 23s5s-aaa | ||||||||||||||
| 16s°-atc-235-atgi-gca | |||||||||||||||
| cd083 | 16s23s5s | 2 | 48 | 2 | 46 | ||||||||||
| 16atcgca235 | différents | ||||||||||||||
| 16-gca-atc-235-aac-5s-ttc-tgc | |||||||||||||||
| cd084 | 2*16-gca-235 | 4 | 54 | 4 | 50 | ||||||||||
| 16s23s5s | cds | ||||||||||||||
| 16atcgca-cds-235 | 16atcgca-cds-235 | ||||||||||||||
| cd089 | 2*16atcgca235 | 5 | 76 | 6 | 70 | 5s en trop | |||||||||
| 2*16-gca-235 | 16-gca-atc-235-aac-5s-ttc-tgc | ||||||||||||||
| 16s23s5s | |||||||||||||||
| autres | |||||||||||||||
| cd092 | 5*16s23s5s | 9 | 68 | 13 | 55 | 16atcgca-cds-235 | |||||||||
| 2*16atcgca235 | |||||||||||||||
| 16-gca-235 | |||||||||||||||
| 8aas-16s | 43 | ||||||||||||||
| lien | blocs | 16s | taas | avec | sans | tpage | Cd095-118 | Notes 5 | |||||||
| cd095 | 3*16-5s-23s | 10 | 70 | 16 | 54 | 16s23s5s | atcgca | gcaatc | gca | atc | autres | av16s | |||
| 16s-5s-atcgca-23s-gta-tta | sans | 6 | 1 | 2 | 1 | 5 | 2 | avant | |||||||
| 16-5s-atcgca-23-aac | 1-3 | 2 | 6 | 1 | 1 | 1 | gac-ttc-ggc-16s-5s-23s | ||||||||
| 2*16-5s-atgf-23s | 4-8 | 4 | 1 | 1 | 15aas-16s5s-atcgca-23s | ||||||||||
| 16-gcc-235-gta | 9-23 | 2 | 4 | 1 | 2 | cgg-tgg-16s5s-gcc-23s-5aas | |||||||||
| gac-ttc-ggc-16s-5s-23s | 24-43 | ttc-cds-16s5s-atc-23s-aac-atgf | |||||||||||||
| 16s-23s | 43 | total | 14 | 7 | 0 | 6 | 2 | 8 | 6 | tcc-16s-cds-235-19aas | |||||
| tcg-16s23s-gca-5s-12aas | |||||||||||||||
| cd102 | 2*16-gca-235 | 7 | 69 | 55 | 14 | ||||||||||
| 2*16s23s5s | autres | ||||||||||||||
| 2*16-gca-235-22,21aas | 16-gcc-235-gta | ||||||||||||||
| 16s23s5s-8aas | 2*16s5s-gcc-23s | ||||||||||||||
| 2*16s5s-gcc-23s-19, 5aas | |||||||||||||||
| cd112 | 16s23s-gca-5s-gta-tac-gga-cga | 2*16-5s-atgf-23s | |||||||||||||
| tcc-16s-cds-235-19aas | 16s-cds-235 | ||||||||||||||
| 16s-cds-235 | 4 | 48 | 39 | 9 | 3*16-5s-23s | ||||||||||
| tcg-16s23s-gca-5s-12aas | 16s-5s-atcgca-23s-gta-tta | ||||||||||||||
| 16-5s-atcgca-23-aac | |||||||||||||||
| cd113 | 16s-atc-235 | 4 | 48 | 32 | 16 | 16s5s-atcgca-23s-aac-atgf | |||||||||
| 16s23s5s | 16s5s-atc-23s-aac | ||||||||||||||
| 16s-gca-235-11 aas | |||||||||||||||
| 16s-gca-235-18 aas | 1-3 | ||||||||||||||
| 16-gcc-235-gta | |||||||||||||||
| cd114 | 16atcgca235 | 4 | 59 | 21 | 38 | 16s5s-atc-23s-aac | |||||||||
| 2*16atcgca235-acc | 16-5s-atcgca-23-aac | ||||||||||||||
| 16s23s5s-13 aas | 3*16atcgca235-acc | ||||||||||||||
| 16s-5s-atcgca-23s-gta-tta | |||||||||||||||
| cd116 | 16s23s5s-aac | 5 | 78 | 35 | 43 | 16s5s-atcgca-23s-aac-atgf | |||||||||
| 16s23s5s-caa-gaa-tac-ggc | 16s23s5s-aac | ||||||||||||||
| 16atcgca235-acc | 16s5s23s-aaa-acc-ctc | ||||||||||||||
| 16s23s5s-8 aas | |||||||||||||||
| 16s23s5s-21 aas | incomplets | ||||||||||||||
| 16s-23s | |||||||||||||||
| cd118 | 2*16s5s-gcc-23s | 10 | 109 | 67 | 42 | ||||||||||
| 16s5s-gcc-23s-19aas | cds | ||||||||||||||
| 16s5s-gcc-23s-5aas | 16s-cds-235 | ||||||||||||||
| 16s5s23s-aaa-acc-ctc | tcc-16s-cds-235-19aas | ||||||||||||||
| 16s5s-atc-23s-aac | ttc-cds-16s5s-atc-23s-aac-atgf | ||||||||||||||
| 16s5s-atcgca-23s-aac-atgf | |||||||||||||||
| 15aas-16s5s-atcgca-23s | 44 | différents | |||||||||||||
| cgg-tgg-16s5s-gcc-23s-5aas | 16s23s-gca-5s-gta-tac-gga-cga | ||||||||||||||
| ttc-cds-16s5s-atc-23s-aac-atgf | |||||||||||||||
| lien | blocs | 16s | taas | avec | sans | tpage | Cd133-153 | Notes 6 | |||||||
| cd133 | 3*16s23s5s | 10 | 85 | 75 | 10 | 16s23s5s | atcgca | gcaatc | gca | atc | autres | av16s | |||
| 2*16s-gca-235 | sans | 9 | 2 | 1-3 | |||||||||||
| 16s23s-gga-5s | 1-3 | 4 | 1 | 16’-gca-235-tta-atgi | |||||||||||
| 16s23s5s-43aas | 4-8 | 2*16s23s-gga-5s | |||||||||||||
| 16s23s5s-18aas | 9-23 | 5 | 1 | 16s23s5s-tta-atgi | |||||||||||
| 16s-gca-235-9aas | 24-43 | 1 | 16s23s5s-gtg-gaa-cgg | ||||||||||||
| 16s23s-aca | 23 | total | 19 | 0 | 0 | 4 | 0 | 0 | 0 | ||||||
| incomplets | |||||||||||||||
| cd136 | 3*16s23s5s | 16 | 110 | 99 | 11 | 2*16s23s-aca | |||||||||
| 16s’-gca-23s°-16s°-23s | 16s’-gca-23s°-16s°-23s | ||||||||||||||
| 16s°-gca-23s’ | 16s-cds-23s°-5s-43aas | ||||||||||||||
| 16s23s-gga-5s | 16s23s°-cds | ||||||||||||||
| 16s23s-aca | 3*16s-23s° | ||||||||||||||
| 16s-cds-23s°-5s-43aas | 16s | ||||||||||||||
| cds-cds-23s°-5s-18aas | |||||||||||||||
| 16s°-23s°-5s-9aas | autres incomplets | ||||||||||||||
| 16s°-gca-23s’ | |||||||||||||||
| 16s23s5s-19aas | 23s5s | ||||||||||||||
| 16s23s5s-tta-atgi | 16s°-23s°-23s’-5s | ||||||||||||||
| 16s23s5s | 16s°gca-23s° | ||||||||||||||
| 16’-gca-235-tta-atgi | |||||||||||||||
| cds | |||||||||||||||
| 23s5s | 16s-cds-23s°-5s-43aas | ||||||||||||||
| 16s | cds-cds-23s°-5s-18aas | ||||||||||||||
| 16s23s°-cds | |||||||||||||||
| 16s23s°-cds | |||||||||||||||
| 3*16s-23s° | différents | ||||||||||||||
| 2*16s23s-gga-5s | |||||||||||||||
| 16s°-23s°-23s’-5s | |||||||||||||||
| 23s°-5s | 5s en trop | ||||||||||||||
| 16s°gca-23s° | cds-cds-23s°-5s-18aas | ||||||||||||||
| 16s°-23s°-5s-9aas | |||||||||||||||
| cd153 | 2*16s23s5s | 6 | 98 | 40 | 58 | 23s°-5s | |||||||||
| 16s23s5s-gtg-gaa-cgg | |||||||||||||||
| 2*16s23s5s-12aas | |||||||||||||||
| 16s23s5s-13aas | 32 | ||||||||||||||
| lien | blocs | 16s | taas | avec | sans | tpage | Cd154-174 | Notes 6 | |||||||
| cd154 | 2*16s-gcc-235 | 4 | 55 | 6 | 49 | 16s23s5s | atcgca | gcaatc | gca | atc | autres | av16s | |||
| 2*16atcgca235 | sans | 13 | 7 | 5 | avant | ||||||||||
| 1-3 | 3 | 1 | 2 | 1 | 1 | cag-gag-16atcgca235-aac | |||||||||
| cd155 | 16atcgca235 | 4 | 48 | 2 | 46 | 4-8 | 1 | 1 | |||||||
| 16s23s5s | 9-23 | autres | |||||||||||||
| 16s23s°23s5s | 24-43 | 2*16s-gcc-235 | |||||||||||||
| 16s23s°23s5s-5s-5s | 35 | total | 16 | 8 | 3 | 0 | 0 | 7 | 1 | 2*16-cds-atcgca-23s16s°5s | |||||
| 16s-cds-16s°-23s-cds-5s | |||||||||||||||
| cd156 | 16s23s5s | 2 | 47 | 2 | 45 | 16s-23s°-gca-atc-23s-16s°-5s-6aas | |||||||||
| 16atcgca235 | 23s°-16s-16s°-23s-5s-aac-ggg | ||||||||||||||
| cd157 | 16s23s5s-aac | 2 | 106 | 4 | 102 | 1-3 | |||||||||
| 16-gcaatc-235-aac | 16s23s5s-aac | ||||||||||||||
| 16s23s5s-aac-ggg | |||||||||||||||
| cd158 | 2*16s23s5s | 3 | 53 | 3 | 50 | 23s°-16s-16s°-23s-5s-aac-ggg | |||||||||
| 16atcgca235-aac | 16atcgca235-aac | ||||||||||||||
| 2*16-gcaatc-235-aac | |||||||||||||||
| cd159 | 16atcgca235 | 2 | 51 | 7 | 44 | ||||||||||
| cag-gag-16atcgca235-aac | cds | ||||||||||||||
| 2*16-cds-atcgca-23s16s°5s | |||||||||||||||
| cd160 | 2*16-cds-atcgca-23s16s°5s | 53 | 4 | 49 | 16s-cds-16s°-23s-cds-5s | ||||||||||
| 16s-cds-16s°-23s-cds-5s | 3 | ||||||||||||||
| différents | |||||||||||||||
| cd161 | 2*16s23s5s | 4 | 57 | 10 | 47 | 16s23s°23s5s | |||||||||
| 16s-23s°-gca-atc-23s-16s°-5s-6aas | 16s23s°23s5s-5s-5s | ||||||||||||||
| 23s°-16s-16s°-23s-5s-aac-ggg | 16s-23s°-gca-atc-23s-16s°-5s-6aas | ||||||||||||||
| 23s°-16s-16s°-23s-5s-aac-ggg | |||||||||||||||
| cd170 | 3*16s23s5s | 5 | 58 | 10 | 48 | ||||||||||
| 16s23s5s-aac-ggg | 5s en trop | ||||||||||||||
| 16-gcaatc-235-6aas | 16s23s°23s5s-5s-5s | ||||||||||||||
| cd173 | 2*16atcgca235 | 2 | 48 | 4 | 44 | ||||||||||
| cd174 | 2*16s23s5s | 3 | 53 | 3 | 50 | ||||||||||
| 16-gcaatc-235-aac | 34 | ||||||||||||||
| lien | blocs | 16s | taas | avec | sans | tpages | Total | ||||||||
| 16s23s5s | atcgca | gcaatc | gca | atc | autres | av16s | |||||||||
| sans | 68 | 14 | 2 | 15 | 5 | 11 | 4 | ||||||||
| 1-3 | 63 | 7 | 10 | 4 | 5 | 2 | 4 | ||||||||
| Moyenne | 68 | 21 | 48 | 4-8 | 6 | 1 | 4 | 0 | 0 | 2 | 4 | ||||
| ecartype | 19 | 23 | 19 | 9-23 | 12 | 0 | 0 | 7 | 0 | 1 | 2 | ||||
| max | 110 | 99 | 102 | 24-43 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | ||||
| min | 47 | 2 | 9 | 254 | total | 150 | 22 | 16 | 26 | 10 | 16 | 14 |
clostridia Notes
Liens aux notes
- Lien tableur: liens aux notes
- Légende:
- - Ce tableau ne sert qu'aux contrôles avec clostridia blocs et
| 1-3 | 1-3 | 1-3 | 1-3 | 1-3 | 1-3 | 1-3 |
|---|---|---|---|---|---|---|
| 16s-atc-23s-aac | 3*16s23s5s-aaa | 16s23s5s-atgi | 3*16s23s5s-aaa | 16-gcc-235-gta | 16’-gca-235-tta-atgi | 16s23s5s-aac |
| 16s-gcaatc-23s5s-ttc-tgc | 3*16s23s5s-aac | 2*16s23s5s-aac | 3*16s23s5s-ttc | 16s5s-atc-23s-aac | 2*16s23s-gga-5s | 16s23s5s-aac-ggg |
| 16s5s-gca-23-aac-gaa-tgc | 2*16s23s5s-ttc | 2*16s23s5s-ttc | 4*16s23s5s-aac | 16-5s-atcgca-23-aac | 16s23s5s-tta-atgi | 23s°-16s-16s°-23s-5s-aac-ggg |
| 16235-aaa-cds-5s-aaa | 16s23s5s-ggc | 5*16s23s5s-aaa | 16s23s5s-gaa | 3*16atcgca235-acc | 16s23s5s-gtg-gaa-cgg | 16atcgca235-aac |
| 16s5s23s-gac-aca | 16s23s5s-ttc-tgc | 3*16s23s5s-atgi-gca | 2*16s23s5s-atgi-gca | 16s-5s-atcgca-23s-gta-tta | 2*16-gcaatc-235-aac | |
| 2*16s23s5s-atgi-gca | 16s23s5s-aac-aac | 16s23s-aac-5s-aac | 3*16s23s5s-atc-gca | 16s5s-atcgca-23s-aac-atgf | ||
| 16s23s5s-ttc-gac-gaa | 2*16s23s5s-atgi-gca | 16s23s5s-atgi-gca-aac | 16-gcaatc-235-aaa | 16s23s5s-aac | ||
| 2*16s23s-aac-5s | 16s23s-aac-5s-aac | 16s23s5s-ttc-5s-ttc-aaa | 16-gcaatc-23-aac | 16s5s23s-aaa-acc-ctc | ||
| 16s23s5s-ttc-5s-ttc-aaa | 16-atc-235-ttc | 2*16-gcaatc-235-ttc | ||||
| 2*16-gca-235-aac | 16-atc-235-ttc-tgc | 16-gcaatc-235-aac-5s-ttc-tgc | ||||
| 16-atc-235-tgg | 16-gcaatc-235-aac | |||||
| 16-gcaatc-235-aac | 16-gcaatc-235-atgi-gca | |||||
| avant | avant | avant | avant | avant | avant | avant |
| 5aas-16s-gcaatc-235-6aas | gca-atc-gga-16s23s5s | atgf-16s23s5s | gac-ttc-ggc-16s-5s-23s | cag-gag-16atcgca235-aac | ||
| agc-16s5s23s-6aas | 5s-atgi-gca-16-gcaatc-235-aac-aac | atgi-gca-16s23s5s-aac | 15aas-16s5s-atcgca-23s | |||
| tca-tcc-16s5s23s-5aas | cgg-tgg-16s5s-gcc-23s-5aas | |||||
| ttc-cds-16s5s-atc-23s-aac-atgf | ||||||
| tcc-16s-cds-235-19aas | ||||||
| tcg-16s23s-gca-5s-12aas | ||||||
| autres | autres | autres | autres | autres | autres | autres |
| 16s5s-atc-23s | 16atcgca-cds-235 | 16-gcc-235-gta | 2*16s-gcc-235 | |||
| 16s5s-gca-23-aac-gaa-tgc | 2*16s5s-gcc-23s | 2*16-cds-atcgca-23s16s°5s | ||||
| 16s5s23s-gac-aca | 2*16s5s-gcc-23s-19, 5aas | 16s-cds-16s°-23s-cds-5s | ||||
| 16s5s23s | 2*16-5s-atgf-23s | 16s-23s°-gcaatc-23s-16s°-5s-6aas | ||||
| 16s-cds-235 | 23s°-16s-16s°-23s-5s-aac-ggg | |||||
| 3*16-5s-23s | ||||||
| 16s-5s-atcgca-23s-gta-tta | ||||||
| 16-5s-atcgca-23-aac | ||||||
| 16s5s-atcgca-23s-aac-atgf | ||||||
| 16s5s-atc-23s-aac | ||||||
| différents | différents | différents | différents | différents | différents | différents |
| 2*16s23s-aac-5s | 16s23s-aac-5s-aac | 16s23s5s-ttc-5s-ttc-aaa | 16-gcaatc-235-aac-5s-ttc-tgc | 16s23s-gca-5s-gta-tac-gga-cga | 2*16s23s-gga-5s | 16s23s°23s5s |
| 16235-aaa-cds-5s-aaa | 16s23s5s-ttc-5s-ttc-aaa | 16s23s-aac-5s-aac | 16s23s°23s5s-5s-5s | |||
| 16s-23s°-gcaatc-23s-16s°-5s-6aas | ||||||
| 23s°-16s-16s°-23s-5s-aac-ggg | ||||||
| incomplets | incomplets | incomplets | incomplets | incomplets | incomplets | incomplets |
| 16s5s-atgi-gca | 16s23s | 8aas-16s | 16s-23s | 2*16s23s-aca | ||
| 16s-gcaatc-23s-aac | 16-gcaatc-23s | 16s-atc-23s | 16s’-gca-23s°-16s°-23s | |||
| 16-gcaatc-23-aac | 16-gcaatc-23-aac | 16s-cds-23s°-5s-43aas | ||||
| 16s23s°-cds | ||||||
| 3*16s-23s° | ||||||
| 16s | ||||||
| autres incomplets | autres incomplets | autres incomplets | autres incomplets | autres incomplets | autres incomplets | autres incomplets |
| 23s5s-aaa | 16s°-gca-23s’ | |||||
| 16s°-atc-235-atgi-gca | 23s5s | |||||
| 16s°-23s°-23s’-5s | ||||||
| 16s°gca-23s° | ||||||
| cds | cds | cds | cds | cds | cds | cds |
| 16235-aaa-cds-5s-aaa | 16atcgca-cds-235 | 16s-cds-235 | 16s-cds-23s°-5s-43aas | 2*16-cds-atcgca-23s16s°5s | ||
| tcc-16s-cds-235-19aas | cds-cds-23s°-5s-18aas | 16s-cds-16s°-23s-cds-5s | ||||
| ttc-cds-16s5s-atc-23s-aac-atgf | 16s23s°-cds | |||||
| 5s en trop | 5s en trop | 5s en trop | 5s en trop | 5s en trop | 5s en trop | 5s en trop |
| 16235-aaa-cds-5s-aaa | 16s23s5s-ttc-5s-ttc-aaa | 5s-ttc | 16-gcaatc-235-aac-5s-ttc-tgc | cds-cds-23s°-5s-18aas | 16s23s°23s5s-5s-5s | |
| 16-gca-2355 | 5s-atgi-gca-16-gcaatc-235-aac-aac | 16s23s5s-ttc-5s-ttc-aaa | 16s°-23s°-5s-9aas | |||
| 5s-ttc | 23s°-5s | |||||
| 5s | ||||||
| avant inversé | avant inversé | avant inversé | avant inversé | avant inversé | avant inversé | avant inversé |
| 16s-gcaatc-235-11aas | 16s23s5s-gca-atc-gga | 16s23s5s-atgf | 16s5s23s-gac-ttc-ggc | 16atcgca235-aac-cag-gag | ||
| 16s5s23s-7aas | 16-gcaatc-235-aac-aac-5s-atgi-gca | 16s23s5s-aac-atgi-gca | 16s5s-atcgca-23s-15aas | |||
| 16s5s23s-7aas | 16s5s-gcc-23s-7aas | |||||
| 16s5s-atc-23s-aac-atgf-ttc-cds | ||||||
| 16s-cds-235-20aas | ||||||
| 16s23s-gca-5s-13aas |
Cumuls notes
- Lien fiche: cumuls notes
|
|
clostridia typage
clostridia blocs intégrés
- Lien tableur: clostridia blocs intégrés
- Légende: voir pour 'avant inversé, gcc atgf autres-cds' clostridia notes, ligne avant inversé et ligne autres. Pour les 16s5s-*-23s voir les clusters en gras, toujours dans clostridia_notes.
- Notes: Dans l'hypothèse que les clusters 'avant 16s', ceux qui ont des tRNAs avant rRNA 16, sont des clusters inversés, j'ai copié tel quel l'avant ducluster vers sa fin. Quand il y a plus de 3 tRNAs ils sont intégrés dans le nombre total à la fin, par exemple 20aas au lieu de 19aas.
| avant inversé | Total intégré | |||||||||
| total | 16s23s5s | atcgca | gcaatc | gca | atc | gcc | atgf | autres-cds | total | |
|---|---|---|---|---|---|---|---|---|---|---|
| - | sans | 68 | 14 | 2 | 15 | 5 | 4 | 2 | 5 | 115 |
| 5 | 1-3 | 63 | 7 | 10 | 4 | 5 | 1 | 0 | 1 | 91 |
| 5 | 4-8 | 6 | 1 | 4 | 0 | 1 | 1 | 13 | ||
| 4 | 9-23 | 12 | 7 | 1 | 20 | |||||
| 24-43 | 1 | 1 | ||||||||
| 14 | total | 150 | 22 | 16 | 26 | 10 | 7 | 2 | 7 | 240 |
| 6 | Dont 16s5s-*-23s | 5 | 3 | 0 | 1 | 2 | 4 | 2 | 0 | 17 |
clostridia cumuls 1-3
- Lien tableur: clostridia cumuls 1-3
| total 1-3 | nbre | 16s23s5s | nbre | 16s-*-23s5s | nbre |
|---|---|---|---|---|---|
| aac | 39 | aac | 22 | aac | 17 |
| ttc | 19 | aaa | 16 | ttc | 6 |
| aaa | 17 | gca | 13 | tgc | 4 |
| gca | 14 | ttc | 13 | atgi | 2 |
| atgi | 13 | atgi | 11 | gta | 2 |
| tgc | 5 | 5s | 3 | tta | 2 |
| 5s | 4 | atc | 3 | 5s | 1 |
| gaa | 4 | gaa | 3 | aaa | 1 |
| atc | 3 | ggg | 3 | atgf | 1 |
| ggg | 3 | gac | 2 | gaa | 1 |
| tta | 3 | gga | 2 | gca | 1 |
| gac | 2 | aca | 1 | tgg | 1 |
| gga | 2 | acc | 1 | total | 39 |
| gta | 2 | cds | 1 | ||
| aca | 1 | cgg | 1 | ||
| acc | 1 | ctc | 1 | ||
| atgf | 1 | ggc | 1 | ||
| cds | 1 | gtg | 1 | ||
| cgg | 1 | tgc | 1 | ||
| ctc | 1 | tta | 1 | ||
| ggc | 1 | total | 100 | ||
| gtg | 1 | ||||
| tgg | 1 | ||||
| total | 139 |
Autres firmicutes
Noms firmicutes
génomes bacilli
- Lien tableur: génomes bacilli
bc001 bc004 bc008 bc014 bc015 bc025 bc029 bc034 bc063 bc065 bc066 bc067 bc074 bc090 bc097 bc125 bc147 bc158 bc165 bc244 bc328 bc384 bc393 bc413 bc499 bc655 bc656 bc657 bc658 bc659 bc660
bc001
- chromosome
| bc001 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 16s23s5s | 444 | 60 | ||
| 16atcgca235-aac-acc | ||||
| 16atcgca235-22aas | ||||
| 16s23s5s-12aas | ||||
| interc | interc | |||
| 203 | 16s | 16 | gaa | |
| 75 | 23s | 12 | ttc | |
| 13 | 5s | 22 | gac | |
| 34 | aac | 41 | atgf | |
| 13 | tcc | 9 | gaa | |
| 21 | gaa | 12 | agc | |
| 14 | gta | 10 | atc | |
| 12 | gac | 3 | gga | |
| 7 | ttc | 17 | gac | |
| 29 | tac | 11 | atgf | |
| 27 | tgg | 18 | tca | |
| 7 | cac | 9 | atgi | |
| 74 | caa | 14 | atgj | |
| 11 | tgc | 5 | gca | |
| 12 | ttg | 4 | cca | |
| 18 | cgt | |||
| 32 | tta | |||
| 11 | ggc | |||
| 8 | aca | |||
| 7 | cta | |||
| 4 | aaa | |||
| 10 | gta | |||
| 75 | 5s | |||
| 165 | 23s | |||
| 34 | gca | |||
| 75 | atc | |||
| 24 | 16s |
bc004
- chromosome
| bc004 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 2*16s23s5s | 666 | 56 | ||
| 16atcgca235-aac-acc | ||||
| 16s23s5s-atgf-gac | ||||
| 16s23s5s-9aas | ||||
| 16s23s5s-13aas | ||||
| interc | interc | |||
| 388 | 16s | 483 | 16s | |
| 186 | 23s | 201 | 23s | |
| 4 | 5s | 11 | 5s | |
| 3 | gta | 4 | aac | |
| 21 | aca | 43 | tcc | |
| 7 | aaa | 32 | gaa | |
| 18 | cta | 31 | atgf | |
| 45 | ggc | 26 | gac | |
| 3 | tta | 7 | ttc | |
| 4 | cgt | 28 | tac | |
| 24 | cca | 11 | tgg | |
| 9 | gca | 32 | cac | |
| 6 | caa | |||
| 25 | ggc | |||
| 5 | tgc | |||
| 13 | ttg |
bc008
- chromosome
| bc008 | rRNAs | tRNAs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2*16atcgca235 | 10,10,10 | 95 | ||||||||||
| 2*16s23s5s | ||||||||||||
| 5*16s23s5s-21,16,9,9,5 aas | ||||||||||||
| cgt gga 16s23s5s atgf gac | ||||||||||||
| interc | interc | interc | interc | |||||||||
| 170 | 16s | 246 | ttg | 4 | gca | 16 | cca | |||||
| 47 | 23s | 7 | tta | 16 | cca | 32 | cgt | |||||
| 23 | 5s | 6 | tgc | 11 | cgt | 296 | ggc | |||||
| 29 | gta | 53 | ggc | 14 | tta | 2 | acc | |||||
| 37 | aca | 9 | caa | 24 | ggc | 45 | aac | |||||
| 10 | aaa | 29 | cac | 6 | cta | 47 | 5s | |||||
| 9 | ctg | 10 | tgg | 36 | aaa | 170 | 23s | |||||
| 19 | ggc | 11 | tac | 5 | aca | 5 | 16s | |||||
| 9 | tta | 3 | aca | 23 | gta | |||||||
| 17 | cgt | 10 | ttc | 47 | 5s | |||||||
| 4 | cca | 7 | gac | 170 | 23s | |||||||
| 19 | gca | 7 | atgf | 9 | 16s | |||||||
| 2 | atgj | 10 | gta | |||||||||
| 7 | atgi | 36 | gaa | 4 | gca | 10 | gac | comp | ||||
| 19 | tca | 5 | tcc | 16 | cca | 19 | atgf | comp | ||||
| 7 | atgf | 9 | aac | 11 | cgt | 47 | 5s | comp | ||||
| 10 | gac | 99 | 5s | 14 | tta | 228 | 23s | comp | ||||
| 20 | ttc | 228 | 23s | 24 | ggc | 97 | 16s | comp | ||||
| 8 | cac | 16 | 16s | 6 | cta | 8 | gga | comp | ||||
| 15 | gga | 36 | aaa | 4 | cgt | comp | ||||||
| 10 | atc | 5 | aca | |||||||||
| 3 | aac | 23 | gta | |||||||||
| 3 | agc | 47 | 5s | |||||||||
| 21 | gaa | 170 | 23s | |||||||||
| 9 | 16s |
bc014
- chromosome
| bc014 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 4*16s23s5s | 10,8,10 | 89 | ||||||
| cgt-gga-16s23s5s-atgf-gac | ||||||||
| 16s°atcgca235 | ||||||||
| 16s23s5s-x aas | ||||||||
| 16atcgca235-x aas | ||||||||
| interc | interc | interc | ||||||
| 3 | gaa | -2934 | 16s° | 228 | 16s | |||
| 3 | agc | 98 | 23s | 47 | 23s | |||
| 10 | aac | 9 | 5s | 23 | 5s | |||
| 15 | atc | 5 | aac | 5 | gta | |||
| 8 | gga | 36 | tcc | 36 | aca | |||
| 20 | cac | 10 | gaa | 6 | aaa | |||
| 10 | ttc | 7 | gta | 24 | cta | |||
| 6 | gac | 9 | atgf | 14 | ggc | |||
| 19 | atgf | 10 | gac | 11 | tta | |||
| 7 | tca | 3 | ttc | 16 | cgt | |||
| 2 | atgi | 11 | aca | 4 | cca | |||
| 20 | atgj | 10 | tac | 9 | gca | |||
| 4 | gca | 29 | tgg | |||||
| 17 | cca | 9 | cac | |||||
| 9 | cgt | 53 | caa | 170 | 16s | |||
| 19 | tta | 6 | ggc | 47 | 23s | |||
| 9 | ggc | 7 | tgc | 46 | 5s | |||
| 10 | ctg | 245 | tta | 2 | aac | |||
| 37 | aaa | 16 | ttg | 342 | acc | |||
| 29 | aca | 32 | ggc | |||||
| 23 | gta | 16 | cgt | |||||
| 47 | 5s | 4 | cca | |||||
| 81 | 23s | 20 | gca | |||||
| 14 | gca | 7 | atgj | |||||
| 96 | atc | |||||||
| 23 | 16s |
bc015
- chromosome
| bc015 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 3*16s23s5s | 10,9,10 | 89 | ||||||
| 16atcgca235 | ||||||||
| 16s23s5s-21,16,9,7 aas | ||||||||
| 16s23s5s-atgf-gac | ||||||||
| 16s°atcgca235 | ||||||||
| interc | interc | interc | ||||||
| 3 | gaa | 170 | 16s | 170 | 16s | |||
| 3 | agc | 97 | 23s | 47 | 23s | |||
| 10 | aac | 9 | 5s | 23 | 5s | |||
| 15 | atc | 5 | aac | 5 | gta | |||
| 8 | gga | 36 | tcc | 36 | aca | |||
| 20 | cac | 10 | gaa | 6 | aaa | |||
| 11 | ttc | 7 | gta | 24 | cta | |||
| 6 | gac | 7 | atgf | 14 | ggc | |||
| 19 | atgf | 10 | gac | 11 | tta | |||
| 7 | tca | 3 | ttc | 16 | cgt | |||
| 2 | atgi | 11 | aca | 4 | cca | |||
| 20 | atgj | 10 | tac | 9 | gca | |||
| 4 | gca | 29 | tgg | |||||
| 17 | cca | 9 | cac | |||||
| 9 | cgt | 52 | caa | 170 | 16s | |||
| 19 | tta | 6 | ggc | 47 | 23s | |||
| 9 | ggc | 7 | tgc | 46 | 5s | |||
| 10 | ctg | 246 | tta | 2 | aac | |||
| 37 | aaa | 16 | ttg | 342 | acc | |||
| 29 | aca | 32 | ggc | |||||
| 23 | gta | 16 | cgt | |||||
| 47 | 5s | 4 | cca | |||||
| 170 | 23s | 20 | gca | |||||
| 21 | 16s | 7 | atgj |
bc025
- chromosome
| bc025 | rRNAs | tRNAs | |||
|---|---|---|---|---|---|
| 2*16s23s5s | 666 | 70 | |||
| 16atcgca235 | |||||
| cgt-gga-16s23s5s-atgf-gac | |||||
| 16s23s5s-x aas | |||||
| interc | interc | ||||
| 3 | gaa | 228 | 16s | ||
| 3 | agc | 98 | 23s | ||
| 10 | aac | 9 | 5s | ||
| 15 | atc | 5 | aac | ||
| 9 | gga | 35 | tcc | ||
| 21 | cac | 10 | gaa | ||
| 11 | ttc | 7 | gta | ||
| 6 | gac | 11 | atgf | ||
| 19 | atgf | 12 | gac | ||
| 7 | tca | 3 | ttc | ||
| 2 | atgi | 11 | aca | ||
| 20 | atgj | 10 | tac | ||
| 4 | gca | 29 | tgg | ||
| 18 | cca | 9 | cac | ||
| 9 | cgt | 50 | caa | ||
| 20 | tta | 6 | ggc | ||
| 9 | ggc | 7 | tgc | ||
| 10 | ctg | 242 | tta | ||
| 37 | aaa | 16 | ttg | ||
| 29 | aca | ||||
| 23 | gta | ||||
| 47 | 5s | ||||
| 170 | 23s | ||||
| 21 | 16s |
bc029
- chromosome
| bc029 | rRNAs | tRNAs | |||||||
|---|---|---|---|---|---|---|---|---|---|
| 4*16s23s5s | 11,11,11 | 112 | |||||||
| 2*16atcgca235 | |||||||||
| 4*16s23s5s-20,19,11,9 aas | |||||||||
| 33aas-16s23s5s-atgf-gac | |||||||||
| interc | interc | interc | |||||||
| 139 | 16s | 10 | gca | 3 | gac | comp | |||
| 97 | 23s | 5 | ggc | 12 | atgf | comp | |||
| 4 | 5s | 5 | aaa | 46 | 5s | comp | |||
| 4 | gta | 65 | caa | 141 | 23s | comp | |||
| 9 | aca | 17 | tac | 75 | 16s | comp | |||
| 22 | cac | 5 | gta | 1 | gga | comp | |||
| 29 | cta | 24 | gaa | 4 | cca | comp | |||
| 16 | ggc | 4 | acc | 3 | cgt | comp | |||
| 3 | tta | 9 | aac | 16 | tta | comp | |||
| 10 | cgt | 82 | 5s | 29 | ggc | comp | |||
| 16 | cca | 141 | 23s | 14 | cta | comp | |||
| 20 | gca | 9 | 16s | 5 | aaa | comp | |||
| 54 | tca | 87 | caa | comp | |||||
| 20 | cta | 1 | gaa | 46 | gac | comp | |||
| 1 | atgf | 8 | aac | 4 | gta | comp | |||
| 12 | gac | 11 | atc | 1 | gaa | comp | |||
| 14 | ttc | 6 | tgg | 8 | aac | comp | |||
| 10 | aca | 9 | aca | 11 | atc | comp | |||
| 13 | aaa | 9 | ttc | 6 | tgg | comp | |||
| 10 | gga | 4 | gac | 9 | aca | comp | |||
| 7 | atc | 20 | atgf | 8 | ttc | comp | |||
| 7 | aac | 54 | tca | 4 | gac | comp | |||
| 20 | agc | 20 | tca | 20 | atgf | comp | |||
| 16 | gca | 54 | tca | comp | |||||
| 10 | ttg | 10 | cca | 20 | tca | comp | |||
| 14 | tgc | 3 | cgt | 16 | gca | comp | |||
| 5 | ggc | 16 | tta | 10 | cca | comp | |||
| 63 | caa | 29 | ggc | 3 | cgt | comp | |||
| 19 | cac | 22 | cta | 16 | tta | comp | |||
| 7 | tgg | 9 | cac | 29 | ggc | comp | |||
| 17 | tac | 4 | aca | 13 | cta | comp | |||
| 5 | gta | 4 | gta | 5 | aaa | comp | |||
| 24 | gaa | 97 | 5s | 87 | caa | comp | |||
| 4 | acc | 141 | 23s | 46 | gac | comp | |||
| 9 | aac | 19 | 16s | 4 | gta | comp | |||
| 96 | 5s | 8 | gaa | comp | |||||
| 141 | 23s | 3 | agc | comp | |||||
| 11 | 16s | 35 | aac | comp |
bc034
- chromosome
| bc034 | rRNAs | tRNAs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5*16s23s5s | 10,10,10 | 94 | ||||||||||
| 16atcgca235-15aas | ||||||||||||
| 3*16s23s5s-22,20,9aas | ||||||||||||
| 11aas-16s23s5s-atgf-gac | ||||||||||||
| interc | interc | interc | interc | |||||||||
| 10 | ttg | 140 | 16s | 1 | gaa | 3 | gac | comp | ||||
| 14 | tgc | 97 | 23s | 8 | aac | 12 | atgf | comp | ||||
| 5 | ggc | 4 | 5s | 10 | atc | 45 | 5s | comp | ||||
| 63 | caa | 4 | gta | 6 | tgg | 141 | 23s | comp | ||||
| 19 | cac | 9 | aca | 9 | aca | 75 | 16s | comp | ||||
| 7 | tgg | 22 | cac | 8 | ttc | 1 | gga | comp | ||||
| 10 | tac | 29 | cta | 4 | gac | 4 | cca | comp | ||||
| 18 | aca | 16 | ggc | 20 | atgf | 98 | cgt | comp | ||||
| 9 | ttc | 3 | tta | 54 | tca | 16 | ctc | comp | ||||
| 3 | gac | 10 | cgt | 20 | tca | 5 | aaa | comp | ||||
| 24 | atgf | 15 | cca | 16 | gca | 88 | caa | comp | ||||
| 5 | gta | 20 | gca | 10 | cca | 46 | gac | comp | ||||
| 17 | gaa | 4 | atgj | 3 | cgt | 4 | gta | comp | ||||
| 2 | tcc | 17 | atgi | 16 | tta | 8 | gaa | comp | ||||
| 8 | aac | 27 | tca | 29 | ggc | 3 | agc | comp | ||||
| 96 | 5s | 1 | atgf | 14 | cta | 13 | aac | comp | ||||
| 77 | 23s | 12 | gac | 4 | aaa | |||||||
| 8 | gca | 14 | ttc | 11 | caa | 10 | gca | |||||
| 130 | atc | 10 | aca | 8 | tac | 5 | ggc | |||||
| 17 | 16s | 13 | aaa | 5 | gta | 5 | aaa | |||||
| 10 | gga | 97 | 5s | 65 | caa | |||||||
| 7 | atc | 141 | 23s | 17 | tac | |||||||
| 7 | aac | 20 | 16s | 5 | gta | |||||||
| 6 | agc | 24 | gaa | |||||||||
| 22 | gaa | 4 | acc | |||||||||
| 9 | aac | |||||||||||
| 82 | 5s | |||||||||||
| 141 | 23s | |||||||||||
| 9 | 16s |
bc063
- chromosome
| bc063 | rRNAs | tRNAs | |||
|---|---|---|---|---|---|
| 16s23s5s | 777 | 75 | |||
| 2*16atcgca235 | |||||
| 16s23s5s-aac-acc | |||||
| 16s23s5s-atgf-gac | |||||
| 2*16s23s5s-21,16 aas | |||||
| interc | interc | ||||
| 176 | 16s | 4 | gaa | ||
| 106 | 23s | 3 | agc | ||
| 9 | 5s | 17 | aac | ||
| 5 | aac | 15 | atc | ||
| 35 | tcc | 9 | gga | ||
| 10 | gaa | 24 | cac | ||
| 7 | gta | 14 | ttc | ||
| 38 | atgf | 39 | gac | ||
| 15 | gac | 36 | atgf | ||
| 5 | ttc | 6 | tca | ||
| 18 | aca | 2 | atgi | ||
| 10 | tac | 21 | atgj | ||
| 25 | tgg | 6 | gca | ||
| 9 | cac | 14 | cca | ||
| 47 | caa | 11 | cgt | ||
| 5 | ggc | 14 | tta | ||
| 6 | tgc | 42 | ggc | ||
| 673 | tta | 7 | cta | ||
| 16 | ttg | 37 | aaa | ||
| 41 | aca | ||||
| 22 | gta | ||||
| 54 | 5s | ||||
| 176 | 23s | ||||
| 21 | 16s |
bc065
- chromosome
| bc065 | rRNAs | tRNAs | |||
|---|---|---|---|---|---|
| 3*16s23s5s | 888 | 80 | |||
| 16s23s5s-atgf-gac | |||||
| 16s23s5s-aac-acc | |||||
| 3*16s23s5s-21,16,9 aas | |||||
| interc | interc | ||||
| 176 | 16s | 4 | gaa | ||
| 106 | 23s | 3 | agc | ||
| 9 | 5s | 17 | aac | ||
| 5 | acc | 15 | atc | ||
| 35 | tcc | 9 | gga | ||
| 10 | gaa | 24 | cac | ||
| 7 | gta | 14 | ttc | ||
| 38 | atgf | 39 | gac | ||
| 15 | gac | 36 | atgf | ||
| 5 | ttc | 6 | tca | ||
| 18 | aca | 2 | atgi | ||
| 10 | tac | 21 | atgj | ||
| 25 | tgg | 6 | gca | ||
| 9 | cac | 14 | cca | ||
| 47 | caa | 11 | cgt | ||
| 5 | ggc | 14 | tta | ||
| 6 | tgc | 42 | ggc | ||
| 673 | tta | 7 | cta | ||
| 16 | ttg | 37 | aaa | ||
| 41 | aca | ||||
| 176 | 16s | 22 | gta | ||
| 54 | 23s | 54 | 5s | ||
| 22 | 5s | 176 | 23s | ||
| 30 | gta | 21 | 16s | ||
| 37 | aca | ||||
| 8 | aaa | ||||
| 42 | cta | ||||
| 14 | ggc | ||||
| 9 | tta | ||||
| 14 | cgt | ||||
| 6 | cca | ||||
| 9 | gca |
bc066
- chromosome
| bc066 | rRNAs | tRNAs | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| 8*16s23s5s | 13,13,13 | 95 | |||||||||
| 4*16s23s5s-22,19,15,8 aas | |||||||||||
| 12aas-16s23s5s-atgf-gac | |||||||||||
| interc | interc | interc | interc | ||||||||
| 140 | 16s | 140 | 16s | 5 | gaa | 3 | aac | ||||
| 96 | 23s | 97 | 23s | 7 | agc | 8 | agc | ||||
| 8 | 5s | 4 | 5s | 7 | aac | 5 | gaa | ||||
| 2 | aac | 4 | gta | 10 | atc | 25 | gta | ||||
| 17 | tcc | 9 | aca | 13 | gga | 3 | atgf | ||||
| 4 | gaa | 22 | cac | 10 | aaa | 87 | gac | ||||
| 26 | gta | 29 | cta | 14 | aca | 5 | caa | ||||
| 3 | atgf | 16 | ggc | 13 | ttc | 16 | aaa | ||||
| 9 | gac | 3 | tta | 3 | gac | 93 | ctc | ||||
| 18 | ttc | 10 | cgt | 27 | atgf | 4 | cgt | ||||
| 10 | aca | 16 | cca | 62 | tca | 1 | cca | ||||
| 7 | tac | 20 | gca | 4 | atgi | 75 | gga | ||||
| 20 | tgg | 54 | tca | 20 | atgj | 140 | 16s | ||||
| 63 | cac | 20 | tca | 15 | gca | 44 | 23s | ||||
| 5 | caa | 3 | atgf | 10 | cca | 12 | 5s | ||||
| 14 | ggc | 8 | gac | 3 | cgt | 3 | atgf | ||||
| 10 | tgc | 9 | ttc | 16 | tta | 174 | gac | ||||
| 15 | ttg | 3 | aca | 29 | ggc | 14 | |||||
| 10 | tgg | 22 | cta | ||||||||
| 140 | 16s | 8 | atc | 9 | cac | ||||||
| 86 | 23s | 1 | aac | 4 | aca | ||||||
| 9 | 5s | 19 | gaa | 4 | gta | ||||||
| 4 | aac | 97 | 5s | ||||||||
| 24 | acc | 140 | 23s | ||||||||
| 5 | gaa | 22 | 16s | ||||||||
| 17 | gta | ||||||||||
| 65 | tac | ||||||||||
| 5 | caa | ||||||||||
| 86 | aaa | ||||||||||
| 8 | gca |
bc067
- chromosome
| bc067 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 7*16s23s5s | 10,10,10 | 83 | ||||||
| 16atcgca235-9aas | ||||||||
| 2*16s23s5s-16,16aas | ||||||||
| interc | interc | interc | ||||||
| 159 | 16s | 303 | 16s | 71 | aaa | |||
| 13 | atc | 67 | 23s | 32 | gaa | |||
| 176 | gca | 8 | 5s | 5 | agc | |||
| 67 | 23s | 3 | aac | 1 | aac | |||
| 8 | 5s | 11 | tcc | 32 | atc | |||
| 5 | gta | 150 | gaa | 39 | gga | |||
| 18 | aca | 261 | gta | 3 | cgt | |||
| 14 | aaa | 55 | atgf | 6 | ggc | |||
| 48 | cta | 33 | gac | 10 | caa | |||
| 25 | ggc | 10 | ttc | 19 | cac | |||
| 3 | tta | 62 | aca | 6 | tgg | |||
| 64 | cgt | 20 | tac | 28 | tac | |||
| 7 | cca | 23 | tgg | 5 | gac | |||
| 11 | gca | 10 | cac | 12 | tca | |||
| 7 | caa | 25 | atgj | |||||
| 6 | ggc | 5 | gca | |||||
| 30 | tgc | 67 | 5s | |||||
| 41 | tta | 316 | 23s | |||||
| 16 | ttg | 16 | 16s |
bc074
- chromosome
| bc074 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 5*16s23s5s | 14,14,14 | 118 | ||||||
| 16s23s5s-atgf-gac | ||||||||
| 2*16atcgca235 | ||||||||
| 5*16s23s5s-22,20,15,9,9 aas | ||||||||
| 13aas-16s23s5s | ||||||||
| interc | interc | interc | ||||||
| 1 | gaa | 10 | ttg | 10 | gca | |||
| 3 | aac | 14 | tgc | 9 | cca | |||
| 10 | atc | 5 | ggc | 3 | cgt | |||
| 3 | tgg | 65 | caa | 16 | tta | |||
| 16 | aca | 12 | cac | 29 | ggc | |||
| 10 | ttc | 14 | tgg | 13 | cta | |||
| 3 | gac | 10 | tac | 13 | aaa | |||
| 24 | atgf | 14 | aca | 5 | aca | |||
| 93 | tca | 9 | ttc | 4 | gta | |||
| 15 | tca | 3 | gac | 87 | 5s | |||
| 14 | gca | 24 | atgf | 139 | 23s | |||
| 10 | cca | 5 | gta | 9 | 16s | |||
| 3 | cgt | 10 | gaa | |||||
| 16 | tta | 5 | tcc | 140 | 16s | |||
| 29 | ggc | 9 | aac | 98 | 23s | |||
| 16 | cta | 92 | 5s | 4 | 5s | |||
| 4 | aaa | 140 | 23s | 6 | gta | |||
| 11 | caa | 15 | 16s | 9 | aca | |||
| 9 | tac | 24 | cac | |||||
| 4 | gta | 45 | 5s | comp | 29 | cta | ||
| 98 | 5s | 140 | 23s | comp | 16 | ggc | ||
| 140 | 23s | 75 | 16s | comp | 3 | tta | ||
| 20 | 16s | 1 | gga | comp | 10 | cgt | ||
| 3 | cca | comp | 14 | cca | ||||
| 10 | gca | 92 | cgt | comp | 16 | gca | ||
| 5 | ggc | 3 | ctc | comp | 4 | atgj | ||
| 5 | aaa | 15 | cta | comp | 17 | atgi | ||
| 65 | caa | 5 | aaa | comp | 24 | tca | ||
| 16 | tac | 85 | caa | comp | 2 | atgf | ||
| 5 | gta | 2 | gac | comp | 11 | gac | ||
| 23 | gaa | 24 | atgf | comp | 14 | ttc | ||
| 4 | acc | 5 | gta | comp | 10 | aca | ||
| 8 | aac | 8 | gaa | comp | 12 | aaa | ||
| 98 | 5s | 3 | agc | comp | 11 | gga | ||
| 141 | 23s | 13 | aac | comp | 4 | atc | ||
| 9 | 16s | 8 | aac | |||||
| 6 | agc | |||||||
| 22 | gaa |
bc090
- chromosome
| bc090 | rRNAs | tRNAs | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7*16s23s5s | 13,13,13 | 95 | ||||||||||
| 16atcgca235 | ||||||||||||
| 4*16s23s5s-22,20,15,9 aas | ||||||||||||
| 11aas-16s23s5s-atgf-gac | ||||||||||||
| interc | interc | interc | interc | |||||||||
| 141 | 16s | 140 | 16s | 6 | gaa | 3 | aac | dir | ||||
| 96 | 23s | 97 | 23s | 7 | agc | 8 | agc | dir | ||||
| 8 | 5s | 5 | 5s | 7 | aac | 4 | gaa | dir | ||||
| 2 | aac | 8 | gta | 10 | atc | 46 | gta | dir | ||||
| 17 | tcc | 11 | tac | 13 | gga | 87 | gac | dir | ||||
| 5 | gaa | 4 | caa | 10 | aaa | 5 | caa | dir | ||||
| 24 | gta | 14 | aaa | 14 | aca | 17 | aaa | dir | ||||
| 3 | atgf | 29 | cta | 12 | ttc | 97 | ctc | dir | ||||
| 9 | gac | 16 | ggc | 1 | gac | 4 | cgt | dir | ||||
| 18 | ttc | 3 | tta | 27 | atgf | 1 | cca | dir | ||||
| 10 | aca | 10 | cgt | 17 | tca | 75 | gga | dir | ||||
| 7 | tac | 15 | cca | 4 | atgi | 141 | 16s | dir | ||||
| 19 | tgg | 20 | gca | 20 | atgj | 45 | 23s | dir | ||||
| 63 | cac | 51 | tca | 16 | gca | 12 | 5s | dir | ||||
| 5 | caa | 27 | tca | 10 | cca | 3 | atgf | dir | ||||
| 14 | ggc | 3 | atgf | 3 | cgt | 13 | gac | dir | ||||
| 10 | tgc | 9 | gac | 16 | tta | |||||||
| 15 | ttg | 9 | ttc | 29 | ggc | 140 | 16s | |||||
| 6 | aca | 22 | cta | 82 | 23s | |||||||
| 10 | tgg | 9 | cac | 9 | 5s | |||||||
| 8 | atc | 4 | aca | 4 | aac | |||||||
| 1 | acc | 4 | gta | 24 | acc | |||||||
| 20 | gaa | 98 | 5s | 5 | gaa | |||||||
| 141 | 23s | 17 | gta | |||||||||
| 22 | 16s | 65 | tac | |||||||||
| 5 | caa | |||||||||||
| 5 | aaa | |||||||||||
| 10 | ggc | |||||||||||
| 9 | gca |
bc097
- chromosome
- RND: efflux RND transporter permease subunit
- SprT: SprT family protein
- K-ligase: lysine--tRNA ligase
- CBS: CBS domain-containing protein
- TsaE: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
- gsp: group-specific protein
- MgtC: MgtC/SapB family protein
- HNH: HNH endonuclease
- kinase: glycerate kinase
| bc097 | rRNAs | tRNAs | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5*16s23s5s | 13,13,13 | 107 | |||||||||||
| 2*16atcgca235 | |||||||||||||
| 12aas-16s23s5s-atgf-gac | |||||||||||||
| 5*16s23s5s-22,20,15,9,9aas | |||||||||||||
| interc | |||||||||||||
| comp | 753 | cds | RND | ||||||||||
| dir | 242 | 16s | |||||||||||
| dir | 222 | 23s | long | interc | |||||||||
| dir | 4 | 5s | dir | 465 | 101 | cds | SprT | ||||||
| dir | 9 | gta | dir | 72 | 6 | aac | |||||||
| dir | 10 | tac | dir | 91 | 6 | agc | interc | ||||||
| dir | 5 | caa | dir | 75 | 5 | gaa | dir | 381 | cds | K-ligase | |||
| dir | 13 | aaa | dir | 76 | 35 | gta | dir | 242 | 16s | ||||
| dir | 29 | cta | dir | 76 | 74 | gac | dir | 144 | 23s | ||||
| dir | 10 | ggc | dir | 75 | 5 | caa | dir | 4 | 5s | ||||
| dir | 3 | tta | dir | 73 | 15 | aaa | dir | 5 | gta | ||||
| dir | 4 | cgt | dir | 81 | 3 | cta | dir | 10 | aca | ||||
| dir | 10 | cca | dir | 86 | 91 | ctc | dir | 14 | aaa | ||||
| dir | 14 | gca | dir | 77 | 4 | cgt | dir | 29 | cta | ||||
| dir | 59 | tca | dir | 77 | 1 | cca | dir | 10 | ggc | ||||
| dir | 19 | tca | dir | 71 | 71 | gga | dir | 3 | tta | ||||
| dir | 3 | atgf | dir | 1554 | 242 | 16s | dir | 8 | cgt | ||||
| dir | 8 | gac | dir | 2926 | 92 | 23s | dir | 10 | cca | ||||
| dir | 14 | ttc | dir | 116 | 10 | 5s | dir | 9 | gca | - | |||
| dir | 6 | aca | dir | 77 | 3 | atgf | |||||||
| dir | 11 | tgg | dir | 76 | 176 | gac | |||||||
| dir | 9 | atc | dir | 474 | 14 | cds | TsaE | ||||||
| dir | 1 | caa | |||||||||||
| dir | 167 | gaa | |||||||||||
| dir | 20 | cds | CBS | ||||||||||
| < dir | 273 | cds | gsp | ||||||||||
| comp | 7 | gaa | |||||||||||
| comp | 4 | agc | interc | ||||||||||
| comp | 4 | aac | comp | 344 | cds | hp | |||||||
| comp | 11 | atc | dir | 242 | 16s | ||||||||
| comp | 13 | gga | dir | 149 | 23s | interc | |||||||
| comp | 10 | aaa | dir | 8 | 5s | dir | 218 | cds | hp | ||||
| comp | 14 | aca | dir | 5 | aac | dir | 242 | 16s | |||||
| comp | 9 | ttc | dir | 12 | tcc | dir | 145 | 23s | |||||
| comp | 1 | gac | dir | 5 | gaa | dir | 8 | 5s | |||||
| comp | 19 | atgf | dir | 23 | gta | dir | 4 | aac | |||||
| comp | 17 | tca | dir | 3 | atgf | dir | 23 | acc | |||||
| comp | 4 | atgi | dir | 8 | gac | dir | 5 | gaa | |||||
| comp | 17 | atgj | dir | 14 | ttc | dir | 9 | gta | |||||
| comp | 14 | gca | dir | 9 | aca | dir | 63 | tac | |||||
| comp | 8 | cca | dir | 7 | tac | dir | 5 | caa | |||||
| comp | 3 | cgt | dir | 10 | tgg | dir | 5 | aaa | |||||
| comp | 10 | tta | dir | 113 | cac | dir | 10 | ggc | |||||
| comp | 29 | ggc | dir | 4 | caa | dir | 97 | gca | |||||
| comp | 18 | cta | dir | 10 | ggc | dir | 9 | cds | kinase | ||||
| comp | 9 | cac | dir | 11 | tgc | ||||||||
| comp | 5 | aca | dir | 309 | ttg | ||||||||
| comp | 4 | gta | dir | 15 | cds | HNH | |||||||
| comp | 144 | 5s | |||||||||||
| comp | 237 | 23s | |||||||||||
| comp | 366 | 16s | |||||||||||
| dir | 22 | cds | MgtC |
bc125
- chromosome
- Les blocs sont emboités. Ils sont tous 16s23s5s. Met avec atgj. Quand les blocs se suivent j’ajoute une ligne pour le 16s suivant.
- - Première boîte, les blocs sont tous 16s23s5s-xaas, 21 16 12 9.
- - Deuxième boîte, les blocs sont tous 16s23s5s-xaas, (14 10 12 9), sauf la boîte 12 qui est 10aas-16s23s5s-atgf-gac.
- GlgB: 1,4-alpha-glucan branching protein GlgB
- SIS: SIS domain-containing protein
- kinase: kinase/pyrophosphorylase
- exo III: exodeoxyribonuclease III
- P3hi: 6-phospho-3-hexuloisomerase
- MgtC: MgtC/SapB family protein
- Y-rec: tyrosine-type recombinase/integrase
- SprT: SprT family protein
- TsaE: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
| bc125 | rRNAs | tRNAs | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 16s23s5s | 12,12,12 | 123 | ||||||||||||||
| 2*16atcgca235 | ||||||||||||||||
| suite3-16s23s5s | ||||||||||||||||
| 10aas-16s23s5s-atgf-gac | ||||||||||||||||
| 7*16s23s5s-21,16,14,12,10,9,9 | ||||||||||||||||
| 1ère bte | ||||||||||||||||
| comp | 466 | cds | GlgB | |||||||||||||
| comp | 5 | gaa | interc | |||||||||||||
| comp | 3 | agc | comp | 808 | cds | SIS | ||||||||||
| comp | 149 | aac | comp | 17 | aac | interc | ||||||||||
| comp | 4 | atc | comp | 70 | atc | comp | 517 | cds | kinase | |||||||
| comp | 17 | gga | comp | 9 | tgc | comp | 4 | atc | ||||||||
| comp | 22 | cac | comp | 31 | caa | comp | 9 | gga | dir | 351 | cds | hp | ||||
| comp | 38 | ttc | comp | 32 | cac | comp | 7 | tgg | dir | 307 | 16s | |||||
| comp | 3 | gac | comp | 28 | tac | comp | 24 | tac | dir | 91 | 23s | |||||
| comp | 29 | atgf | comp | 17 | gac | comp | 15 | tca | dir | 7 | 5s | |||||
| comp | 17 | tca | comp | 104 | tca | comp | 19 | atgj | dir | 161 | gta | |||||
| comp | 12 | atgi | comp | 23 | atgj | comp | 9 | gca | dir | 19 | aca | |||||
| comp | 19 | atgj | comp | 17 | cca | comp | 9 | cca | dir | 9 | aaa | |||||
| comp | 17 | gca | comp | 12 | cgt | comp | 5 | tta | dir | 8 | cta | |||||
| comp | 5 | cca | comp | 11 | ggc | comp | 8 | ggc | dir | 5 | ggc | |||||
| comp | 7 | cgt | comp | 242 | aaa | comp | 10 | cta | dir | 13 | tta | |||||
| comp | 5 | tta | comp | 104 | aca | comp | 186 | aca | dir | 17 | cgt | |||||
| comp | 9 | ggc | comp | 4 | gta | comp | 91 | 5s | dir | 18 | cca | |||||
| comp | 9 | cta | comp | 41 | gaa | comp | 307 | 23s | dir | 9 | gca | |||||
| comp | 163 | aaa | comp | 91 | 5s | comp | 555 | 16s | dir | 16s | suite2 | |||||
| comp | 162 | aca | comp | 284 | 23s | comp | 12 | cds | exo III | |||||||
| comp | 8 | gta | comp | 437 | 16s | |||||||||||
| comp | 145 | 5s | comp | 16 | cds | P3hi | ||||||||||
| comp | 286 | 23s | ||||||||||||||
| comp | 506 | 16s | ||||||||||||||
| dir | 21 | cds | MgtC | |||||||||||||
| 2ème bte | ||||||||||||||||
| dir | 271 | cds | hp | dir | 146 | cds | SprT | |||||||||
| dir | 284 | 16s | interc | dir | 4 | aac | interc | |||||||||
| dir | 143 | 23s | dir | 254 | cds | hp | dir | 15 | agc | dir | 307 | 16s | suite2 | |||
| dir | 10 | 5s | dir | 142 | 16s | dir | 49 | gaa | dir | 91 | 23s | |||||
| dir | 7 | aac | dir | 144 | 23s | dir | 22 | gac | dir | 7 | 5s | |||||
| dir | 18 | tcc | dir | 10 | 5s | dir | 8 | caa | dir | 161 | gta | |||||
| dir | 4 | gaa | dir | 26 | aac | dir | 62 | cta | dir | 19 | aca | |||||
| dir | 20 | gta | dir | 18 | acc | dir | 60 | ctc | dir | 9 | aaa | |||||
| dir | 3 | atgf | dir | 7 | gaa | dir | 16 | cgt | dir | 8 | cta | |||||
| dir | 38 | gac | dir | 176 | gta | dir | 15 | cca | dir | 5 | ggc | |||||
| dir | 32 | ttc | dir | 8 | aca | dir | 106 | gga | dir | 13 | tta | |||||
| dir | 7 | tac | dir | 46 | tac | dir | 308 | 16s | dir | 17 | cgt | |||||
| dir | 14 | tgg | dir | 8 | caa | dir | 91 | 23s | dir | 18 | cca | |||||
| dir | 41 | cac | dir | 56 | aaa | dir | 165 | 5s | dir | 9 | gca | |||||
| dir | 5 | caa | dir | 6 | ggc | dir | 3 | atgf | dir | 16s | suite3 | |||||
| dir | 8 | ggc | dir | 255 | gca | dir | 155 | gac | ||||||||
| dir | 6 | tgc | dir | 10 | cds | arginase | dir | 12 | cds | TsaE | ||||||
| dir | 132 | ttg | ||||||||||||||
| dir | 14 | cds | Y-rec |
bc147
- chromosome
| bc147 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 3*16s23s5s encadrés | 10,10,10 | 86 | ||||||
| 2*16atcgca235 | ||||||||
| cgt-gga-16s23s5s-atgf-gac | ||||||||
| 16s23s5s-21, 16, 9, 6aas | ||||||||
| interc | interc | interc | ||||||
| 16s | 164 | cgt | 13 | gaa | 25 | |||
| 23s | 55 | gga | 159 | agc | 3 | |||
| 5s | 20 | 16s | 167 | aac | 10 | |||
| gta | 4 | 23s | 55 | atc | 15 | |||
| aca | 36 | 5s | 13 | gga | 10 | |||
| aaa | 6 | atgf | 60 | cac | 17 | |||
| cta | 40 | gac | 4 | ttc | 12 | |||
| ggc | 14 | gac | 11 | |||||
| tta | 9 | 16s | 167 | atgf | 17 | |||
| cgt | 27 | 23s | 111 | tca | 6 | |||
| cca | 9 | 5s | 9 | atgi | 2 | |||
| gca | 170 | aac | 5 | atgj | 19 | |||
| 16s | 164 | tcc | 34 | gca | 5 | |||
| 23s | 55 | gaa | 9 | cca | 15 | |||
| 5s | 9 | gta | 9 | cgt | 9 | |||
| atgf | 11 | tta | 14 | |||||
| 16s | 164 | gac | 12 | ggc | 5 | |||
| 23s | 55 | ttc | 5 | ctg | 10 | |||
| 5s | 46 | aca | 22 | aaa | 37 | |||
| aac | 4 | tac | 5 | aca | 32 | |||
| acc | 56 | tgg | 24 | gta | 20 | |||
| ggc | 30 | cac | 9 | 16s | 55 | |||
| cgt | 27 | caa | 49 | 23s | 167 | |||
| cca | 8 | ggc | 5 | 5s | 21 | |||
| gca | 171 | tgc | 7 | |||||
| 16s | 164 | tta | 265 | |||||
| 23s | 55 | ttg | 16 | |||||
| 5s | 183 | |||||||
| 16s | 164 | |||||||
| 23s | 55 | |||||||
| 5s | 6 |
bc158
- chromosome
- Les blocs sont emboités. Ils sont tous de type 16s23s5s-xaas, 22 20 15 9 9, sauf 14 avec 12aas-16s23s5s-atgf-gac.
- lactate: L-lactate dehydrogenase
- CBS: CBS domain-containing protein
- SprT: SprT family protein
- K-ligase: lysine--tRNA ligase
- TsaE: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
- DUF3884: DUF3884 family protein
- kinase: glycerate kinase
| bc158 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 5*16s23s5s | 14,14,14 | 142 | ||||||
| 2*16atcgca235 | ||||||||
| suite2-16s23s5s | ||||||||
| 5*16s23s5s-22,20,15,9,9aas | ||||||||
| 12aas-16s23s5s-atgf-gac | ||||||||
| interc | ||||||||
| comp | 680 | cds | lactate | interc | ||||
| comp | 6 | gaa | dir | 113 | cds | hp | ||
| comp | 7 | agc | dir | 140 | 16s | |||
| comp | 7 | aac | dir | 97 | 23s | |||
| comp | 10 | atc | dir | 5 | 5s | |||
| comp | 13 | gga | dir | 8 | gta | |||
| comp | 10 | aaa | dir | 11 | tac | |||
| comp | 14 | aca | dir | 4 | caa | |||
| comp | 9 | ttc | dir | 15 | aaa | |||
| comp | 3 | gac | dir | 29 | cta | |||
| comp | 28 | atgf | dir | 16 | ggc | |||
| comp | 17 | tca | dir | 3 | tta | |||
| comp | 4 | atgi | dir | 10 | cgt | |||
| comp | 20 | atgj | dir | 15 | cca | |||
| comp | 15 | gca | dir | 20 | gca | |||
| comp | 10 | cca | dir | 53 | tca | |||
| comp | 3 | cgt | dir | 19 | tca | |||
| comp | 16 | tta | dir | 3 | atgf | |||
| comp | 29 | ggc | dir | 8 | gac | |||
| comp | 22 | cta | dir | 10 | ttc | |||
| comp | 10 | cac | dir | 3 | aca | |||
| comp | 4 | aca | dir | 10 | tgg | |||
| comp | 4 | gta | dir | 8 | atc | |||
| comp | 97 | 5s | dir | 1 | aac | |||
| comp | 140 | 23s | dir | 129 | gaa | |||
| comp | 103 | 16s | dir | 20 | cds | CBS | ||
| comp | 22 | cds | hp | |||||
| interc | ||||||||
| dir | 113 | cds | SprT | |||||
| dir | 3 | aac | interc | |||||
| dir | 8 | agc | dir | 372 | cds | K-ligase | ||
| dir | 4 | gaa | dir | 140 | 16s | |||
| dir | 26 | gta | dir | 97 | 23s | |||
| dir | 3 | atgf | dir | 4 | 5s | |||
| dir | 86 | gac | dir | 4 | gta | |||
| dir | 5 | caa | dir | 13 | aca | |||
| dir | 17 | aaa | dir | 14 | aaa | |||
| dir | 93 | ctc | dir | 29 | cta | |||
| dir | 4 | cgt | dir | 16 | ggc | |||
| dir | 1 | cca | dir | 3 | tta | |||
| dir | 76 | gga | dir | 8 | cgt | |||
| dir | 139 | 16s | dir | 9 | cca | |||
| dir | 46 | 23s | dir | 9 | gca | |||
| dir | 12 | 5s | dir | - | 16s | suite2 | ||
| dir | 3 | atgf | ||||||
| dir | 174 | gac | ||||||
| dir | 14 | cds | TsaE | |||||
| interc | ||||||||
| dir | 112 | cds | hp | |||||
| dir | 139 | 16s | ||||||
| dir | 97 | 23s | interc | |||||
| dir | 8 | 5s | dir | 103 | cds | hp | ||
| dir | 2 | aac | dir | 140 | 16s | |||
| dir | 17 | tcc | dir | 86 | 23s | |||
| dir | 4 | gaa | dir | 9 | 5s | |||
| dir | 26 | gta | dir | 4 | aac | |||
| dir | 3 | atgf | dir | 21 | acc | |||
| dir | 9 | gac | dir | 5 | gaa | |||
| dir | 18 | ttc | dir | 16 | gta | |||
| dir | 10 | aca | dir | 65 | tac | |||
| dir | 7 | tac | dir | 5 | caa | |||
| dir | 19 | tgg | dir | 5 | aaa | |||
| dir | 63 | cac | dir | 10 | ggc | |||
| dir | 5 | caa | dir | 116 | gca | |||
| dir | 14 | ggc | dir | 9 | cds | kinase | ||
| dir | 10 | tgc | ||||||
| dir | 144 | ttg | ||||||
| comp | 15 | cds | DUF3884 |
bc165
- chromosome
- Les blocs sont emboités. Ils sont tous de type 16s23s5s-xaas, 20 15 9, sauf 14 avec 12aas-16s23s5s-atgf-gac.
- DUF3884: DUF3884 family protein
- CBS: CBS domain-containing protein
- SprT: SprT family protein
- kinase: glycerate kinase
- TsaE: tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
| bc165 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 10*16s23s5s | 15,15,15 | 78 | ||||||
| 16s23s5s-gaa | ||||||||
| 3*16s23s5s-20,15,9 | ||||||||
| 12aas-16s23s5s-atgf-gac | ||||||||
| interc | ||||||||
| dir | 139 | cds | hp | |||||
| dir | 141 | 16s | ||||||
| dir | 97 | 23s | interc | |||||
| dir | 4 | 5s | dir | 403 | cds | hp | ||
| dir | 8 | gta | comp | 141 | 16s | |||
| dir | 12 | tac | comp | 98 | 23s | |||
| dir | 4 | caa | comp | 8 | 5s | |||
| dir | 18 | aaa fin | comp | 2 | aac | |||
| dir | 31 | cta deb | comp | 18 | tcc | |||
| dir | 16 | ggc | comp | 4 | gaa | |||
| dir | 3 | tta | comp | 26 | gta | |||
| dir | 10 | cgt | comp | 3 | atgf | |||
| dir | 15 | cca | comp | 11 | gac | |||
| dir | 20 | gca | comp | 18 | ttc | |||
| dir | 56 | tca | comp | 10 | aca | |||
| dir | 20 | tca | comp | 7 | tac | |||
| dir | 3 | atgf | comp | 19 | tgg | |||
| dir | 8 | gac | comp | 63 | cac | |||
| dir | 10 | ttc | comp | 5 | caa | |||
| dir | 6 | aca | comp | 14 | ggc | |||
| dir | 10 | tgg | comp | 10 | tgc | |||
| dir | 9 | atc | comp | 152 | ttg | |||
| dir | 1 | aac | dir | 15 | cds | DUF3884 | ||
| dir | 132 | gaa | ||||||
| dir | 20 | cds | CBS | |||||
| interc | ||||||||
| dir | 114 | cds | SprT | |||||
| dir | 3 | aac | ||||||
| dir | 8 | agc | interc | |||||
| dir | 4 | gaa | dir | 224 | cds | hp | ||
| dir | 25 | gta | dir | 141 | 16s | |||
| dir | 3 | atgf | dir | 86 | 23s | |||
| dir | 87 | gac | dir | 9 | 5s | |||
| dir | 5 | caa | dir | 4 | aac | |||
| dir | 16 | aaa | dir | 22 | acc | |||
| dir | 98 | ctc | dir | 5 | gaa | |||
| dir | 4 | cgt | dir | 16 | gta | |||
| dir | 1 | cca | dir | 65 | tac | |||
| dir | 76 | gga | dir | 5 | caa | |||
| dir | 141 | 16s | dir | 5 | aaa | |||
| dir | 45 | 23s | dir | 10 | ggc | |||
| dir | 12 | 5s | dir | 117 | gca | |||
| dir | 2 | atgf | dir | 9 | cds | kinase | ||
| dir | 174 | gac | ||||||
| dir | 14 | cds | TsaE |
bc244
- chromosome
| bc244 | rRNAs | tRNAs | |||
|---|---|---|---|---|---|
| 4*16atcgca235 | 999 | 98 | |||
| 16atcgca235-5aas | |||||
| 2*16s23s5s | |||||
| 16s23s5s-6, 5aas | |||||
| interc | interc | ||||
| cds | 161 | cds | 298 | ||
| gta | 3 | 5s | 68 | ||
| gaa | 138 | 23s | 208 | ||
| atgj | 6 | 16s | 436 | ||
| tcc | 8 | cds | -8 | ||
| aac | 7 | cds | 138 | ||
| 5s | 69 | gac | 3 | ||
| 23s | 126 | gta | 2 | ||
| gca | 69 | cgt | 35 | ||
| atc | 105 | ggc | 19 | ||
| 16s | 547 | cca | 3 | ||
| cds | 7 | aac | 7 | ||
| 5s | 68 | ||||
| cds | 200 | 23s | 208 | ||
| gac | 26 | 16s | 501 | ||
| gaa | 3 | cds | 6 | ||
| gta | 2 | ||||
| cgt | 35 | ||||
| ggc | 36 | ||||
| 5s | 68 | ||||
| 23s | 208 | ||||
| 16s | 153 | ||||
| cds | 5 |
bc328
- chromosome
| bc328 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 2*16s23s5s | 666 | 67 | ||||||
| 2*16s23s5s-21,9 | ||||||||
| 16atcgca235-14aas | ||||||||
| 16atcgca235-aac-acc | ||||||||
| interc | interc | interc | ||||||
| 16s | 244 | gaa | 5 | ttg | 45 | |||
| 23s | 80 | agc | 34 | tgc | 19 | |||
| 5s | 13 | aac | 6 | ggc | 5 | |||
| gta | 8 | atc | 25 | caa | 29 | |||
| aca | 41 | gga | 23 | cac | 15 | |||
| aaa | 5 | cac | 28 | tgg | 7 | |||
| cta | 14 | ttc | 4 | tac | 20 | |||
| ggc | 21 | gac | 4 | ttc | 4 | |||
| tta | 12 | atgf | 42 | gac | 6 | |||
| cgt | 10 | tca | 22 | atgf | 21 | |||
| cca | 19 | atgi | 11 | gta | 56 | |||
| gca | 341 | atgj | 42 | gaa | 33 | |||
| 16s | 244 | gca | 22 | tcc | 6 | |||
| 23s | 80 | cca | 10 | aac | 14 | |||
| 5s | 9 | cgt | 9 | 5s | 80 | |||
| tta | 14 | 23s | 172 | |||||
| ggc | 15 | gca | 46 | |||||
| acc | 24 | cta | 5 | atc | 127 | |||
| aac | 14 | aaa | 41 | 16s | 16 | |||
| 5s | 80 | aca | 8 | |||||
| 23s | 172 | gta | 13 | |||||
| gca | 46 | 5s | 81 | |||||
| atc | 127 | 23s | 244 | |||||
| 16s | 4 | 16s | 21 |
bc384
- chromosome
| bc384 | rRNAs | tRNAs | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 5*16s23s5s | 14,14,14 | 175 | ||||||||||||
| 9*16s23s5s-23 22 19 | ||||||||||||||
| 17 16 12 11 9 9 | ||||||||||||||
| interc | interc | interc | interc | interc | ||||||||||
| cds | 342 | cds | 677 | cds | 537 | cds | 373 | cds | 324 | |||||
| ctc | 28 | 16s | 268 | 16s | 252 | 16s | 260 | 16s | 258 | |||||
| tcc | 12 | 23s | 95 | 23s | 94 | 23s | 168 | 23s | 166 | |||||
| atgf | 14 | 5s | 55 | 5s | 43 | 5s | 9 | 5s | 31 | |||||
| atgj | 14 | atc | 19 | atc | 19 | aac | 6 | aac | 6 | |||||
| agc | 8 | gca | 16 | gca | 17 | tcc | 38 | tcc | 38 | |||||
| tcg | 4 | gaa | 9 | gaa | 8 | gaa | 11 | gaa | 11 | |||||
| acc | 4 | tac | 20 | gta | 5 | gta | 17 | gta | 17 | |||||
| gca | 119 | aac | 3 | aca | 10 | atgf | 13 | atgf | 15 | |||||
| ncRNA | 36 | gta | 19 | tac | 18 | gac | 49 | gac | 67 | |||||
| cca | 6 | gac | 20 | aac | 4 | ttc | 4 | acg | 11 | |||||
| cgt | 104 | ttc | 15 | gta | 21 | aca | 13 | cac | 10 | |||||
| ggc | 7 | aaa | 10 | atgf | 12 | tac | 8 | caa | 5 | |||||
| ctg | 9 | ctg | 3 | gac | 34 | tgg | 13 | aaa | 17 | |||||
| aaa | 9 | ggc | 12 | cac | 13 | cac | 26 | ggc | 40 | |||||
| caa | 9 | tgc | 15 | caa | 8 | caa | 9 | ggc | 24 | |||||
| cac | 17 | cgt | 5 | aaa | 17 | ggc | 12 | ttg | 5 | |||||
| gac | 12 | cca | 158 | ctc | 13 | tgc | 10 | cca | 19 | |||||
| gta | 4 | gca | 4 | ctg | 5 | tta | 20 | gga | 1 | |||||
| aac | 15 | acc | 5 | ggc | 14 | cgt | 3 | aga | 187 | |||||
| tac | 8 | tcg | 19 | tgc | 10 | ttg | 147 | cds | 16 | |||||
| aca | 5 | agc | 17 | cgt | 5 | cds | 17 | |||||||
| gaa | 15 | gtc | 5 | cca | 105 | cds | 83 | |||||||
| gcc | 9 | acg | 39 | cds | 19 | cds | 797 | gga | 5 | |||||
| atc | 54 | tcc | 41 | 16s | 261 | cca | 16 | |||||||
| 5s | 112 | ctc | 283 | cds | 298 | 23s | 94 | cgt | 4 | |||||
| 23s | 258 | cds | 22 | 16s | 254 | 5s | 43 | ggc | 8 | |||||
| 16s | 403 | 23s | 168 | atc | 11 | cta | 42 | |||||||
| cds | 23 | cds | 104 | 5s | 15 | gaa | 5 | aaa | 8 | |||||
| ggg | 5 | agc | 29 | gtc | 5 | caa | 9 | |||||||
| cca | 106 | atgj | 39 | atgf | 4 | tgg | 4 | |||||||
| cgt | 11 | gta | 15 | tgg | 9 | atgf | 5 | |||||||
| ggc | 5 | atgf | 14 | caa | 8 | gtc | 5 | |||||||
| ctg | 13 | gac | 48 | aaa | 18 | gaa | 11 | |||||||
| ctc | 16 | ttc | 5 | ctg | 4 | atc | 43 | |||||||
| aaa | 10 | aca | 9 | ggc | 11 | 5s | 94 | |||||||
| tac | 28 | tac | 15 | cgt | 12 | 23s | 255 | |||||||
| ttc | 12 | aaa | 183 | cca | 577 | 16s | 306 | |||||||
| 5s | 159 | cds | 9 | cds | 11 | cds | 12 | |||||||
| 23s | 256 | |||||||||||||
| 16s | 537 | |||||||||||||
| cds | 9 |
bc393
- chromosome
| bc393 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 7*16s23s5s | 14,13,13 | 165 | ||||||
| 16s-gca-235 | ||||||||
| 16s-5s-atcgca-23s-8aas | ||||||||
| 16s-5s-atcgca-23s-5s-11aas | ||||||||
| 3*16s23s5s-11, 17, 21 aas | ||||||||
| interc | interc | interc | ||||||
| cds | 392 | cds | 1 116 | cds | 726 | |||
| 16s | 207 | 16s | 207 | gga | 9 | |||
| 23s | 76 | 23s | 76 | cca | 22 | |||
| 5s | 34 | 5s | 82 | cgt | 5 | |||
| atc | 22 | gca | 4 | ggc | 10 | |||
| gca | 4 | aac | 3 | cta | 11 | |||
| aac | 34 | tcc | 19 | aaa | 4 | |||
| atgj | 3 | gaa | 9 | caa | 55 | |||
| agc | 31 | gta | 29 | gta | 11 | |||
| gaa | 6 | atgf | 25 | gaa | 11 | |||
| gta | 10 | gac | 13 | acc | 3 | |||
| atgf | 25 | aca | 4 | aac | 18 | |||
| gac | 50 | tac | 102 | 5s | 76 | |||
| ttc | 22 | caa | 4 | 23s | 129 | |||
| aca | 5 | aaa | 12 | gca | 20 | |||
| tac | 16 | cta | 10 | atc | 38 | |||
| cac | 18 | ggc | 5 | 5s | 93 | |||
| caa | 4 | cgt | 12 | 16s | 367 | |||
| aaa | 15 | ttg | 7 | cds | 13 | |||
| ctg | 6 | cca | 7 | |||||
| ggc | 10 | gga | 1 133 | cds | 107 | |||
| tgc | 26 | cds | 17 | cca | 7 | |||
| cgt | 22 | ttg | 12 | |||||
| cca | 9 | cds | 412 | cgt | 5 | |||
| gga | 204 | 16s | 108 | ggc | 35 | |||
| cds | 21 | 5s | 39 | aaa | 28 | |||
| atc | 20 | gac | 26 | |||||
| gca | 128 | atgf | 30 | |||||
| 23s | 130 | gta | 9 | |||||
| agc | 28 | gaa | 17 | |||||
| atgj | 10 | tcc | 3 | |||||
| gta | 4 | aac | 18 | |||||
| aca | 19 | 5s | 76 | |||||
| gac | 77 | 23s | 400 | |||||
| ttc | 6 | 16s | 493 | |||||
| tac | 7 | cds | 11 | |||||
| aaa | 154 | |||||||
| cds | 10 |
bc413
- chromosome
| bc413 | rRNAs | tRNAs | ||||
|---|---|---|---|---|---|---|
| 16atcgca235 | 755 | 63 | ||||
| 16atcgca-235-26aas | ||||||
| 16s23s5s-6aas | ||||||
| 5s-8aas-16s-atc-235 | ||||||
| ctc-gga-16s23s5s | ||||||
| 23s°5s | ||||||
| interc | interc | |||||
| ttg | 38 | 5s | 70 | comp | ||
| gga | 103 | 23s | 468 | comp | ||
| gga | 7 | 16s | 118 | comp | ||
| tgc | 5 | gga | 21 | comp | ||
| caa | 11 | ctc | 2 | comp | ||
| cac | 2 | |||||
| tgg | 15 | 5s | 12 | direct | ||
| tac | 5 | gta | 16 | direct | ||
| aca | 7 | aca | 6 | direct | ||
| ttc | 18 | aaa | 33 | direct | ||
| gac | 21 | ggc | 7 | direct | ||
| atgf | 14 | tta | 5 | direct | ||
| tca | 38 | cgt | 20 | direct | ||
| gac | 10 | cca | 23 | direct | ||
| tca | 9 | gca | 121 | direct | ||
| atgi | 28 | 16s | 92 | direct | ||
| atgj | 21 | atc | 166 | direct | ||
| gca | 17 | 23s | 70 | direct | ||
| cca | 9 | 5s | 9 | direct | ||
| cgt | 18 | |||||
| tta | 10 | aaa | 3 | |||
| ggc | 3 | caa | 9 | |||
| cta | 3 | tac | 29 | |||
| aaa | 5 | gta | 7 | |||
| aca | 16 | gaa | 1 | |||
| gta | 11 | aac | 10 | |||
| 5s | 70 | 5s | 70 | |||
| 23s | 212 | 23s | 468 | |||
| gca | 18 | 16s | 6 | |||
| atc | 89 | |||||
| 16s | 28 |
bc499
- chromosome
| bc499 | rRNAs | tRNAs | |||
|---|---|---|---|---|---|
| 2*16-gca-235-aac | 777 | 80 | |||
| 5*16-gca-235-17,15,12,9,4 aas | |||||
| interc | interc | ||||
| 16s | 47 | 16s | 47 | ||
| gca | 153 | gca | 155 | ||
| 23s | 72 | 23s | 72 | ||
| 5s | 3 | 5s | 3 | ||
| gta | 2 | gta | 2 | ||
| gac | 2 | gac | 2 | ||
| aaa | 9 | aaa | 9 | ||
| cta | 10 | cta | 10 | ||
| aca | 35 | aca | 28 | ||
| ggc | 8 | atc | 10 | ||
| tta | 11 | gaa | 13 | ||
| cgt | 7 | tca | 10 | ||
| cca | 15 | atgf | 2 | ||
| atgj | 19 | ttc | 11 | ||
| atgi | 15 | tac | 6 | ||
| tca | 10 | tgg | 14 | ||
| atgf | 2 | cac | 6 | ||
| ttc | 20 | caa | 10 | ||
| gga | 34 | ttg | 16 | ||
| atc | 13 | ||||
| agc | 18 | 16s | 47 | ||
| gca | 153 | ||||
| 16s | 47 | 23s | 72 | ||
| gca | 153 | 5s | 3 | ||
| 23s | 72 | gta | 2 | ||
| 5s | 3 | gac | 2 | ||
| gta | 5 | aaa | 9 | ||
| gga | 36 | cta | 10 | ||
| atc | 10 | aca | 35 | ||
| gaa | 13 | ggc | 8 | ||
| tca | 10 | tta | 11 | ||
| atgf | 2 | cgt | 7 | ||
| ttc | 11 | cca | 10 | ||
| tac | 6 | ||||
| tgg | 14 | 16s | 47 | ||
| cac | 6 | gca | 153 | ||
| caa | 10 | 23s | 72 | ||
| ttg | 13 | 5s | 3 | ||
| gta | 5 | ||||
| gga | 36 | ||||
| atc | 10 | ||||
| gaa | 5 |
bc655
- chromosome
- permease: amino acid permease
- PL17: 50S ribosomal protein L17
- AraC: AraC family transcriptional regulator
- MreC: rod shape-determining protein MreC
- RaiA: ribosome-associated translation inhibitor RaiA
| bc655 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 2*16-gca-235-aac-cgt | 555 | 59 | ||||||
| 16s-gca-235-17, 12, 7 aas | ||||||||
| interc | ||||||||
| dir | 361 | cds | permease | |||||
| dir | 66 | 16s | interc | |||||
| dir | 193 | gca | dir | 592 | cds | PL17 | ||
| dir | 200 | 23s | dir | 66 | 16s | |||
| dir | 15 | 5s | dir | 193 | gca | |||
| dir | 18 | gta | dir | 200 | 23s | |||
| dir | 73 | gac | dir | 15 | 5s | |||
| dir | 5 | aaa | dir | 9 | gta | |||
| dir | 10 | cta | dir | 31 | gga | |||
| dir | 13 | aca | dir | 16 | atc | |||
| dir | 8 | ggc | dir | 5 | caa | |||
| dir | 18 | tta | dir | 10 | tca | |||
| dir | 3 | cgt | dir | 21 | atgf | |||
| dir | 5 | cca | dir | 17 | ttc | |||
| dir | 24 | atgj | dir | 5 | tac | |||
| dir | 6 | atgi | dir | 11 | tgg | |||
| dir | 10 | tca | dir | 8 | cac | |||
| dir | 21 | atgf | dir | 22 | caa | |||
| dir | 11 | ttc | dir | 82 | ttg | |||
| dir | 32 | gga | <>dir | 13 | cds | AraC | ||
| dir | 7 | atc | ||||||
| dir | 69 | agc | ||||||
| dir | 18 | cds | MreC | |||||
| interc | ||||||||
| dir | 83 | cds | hp | |||||
| comp | 16 | gaa | ||||||
| comp | 50 | atc | ||||||
| comp | 10 | aca | ||||||
| comp | 5 | cta | ||||||
| comp | 73 | aaa | ||||||
| comp | 18 | gac | ||||||
| comp | 15 | gta | ||||||
| comp | 200 | 5s | ||||||
| comp | 193 | 23s | ||||||
| comp | 66 | gca | ||||||
| comp | 345 | 16s | ||||||
| comp | 8 | cds | RaiA |
bc656
- chromosome
- SprT: SprT family protein
| bc656 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 4*16s23s5s | 888 | 56 | ||||||
| 16s23s5s-aac-acc | ||||||||
| 16atcgca235 | ||||||||
| 11aas-16s23s5s-atgf-gac | ||||||||
| 16s23s5s-13aas | ||||||||
| interc | interc | |||||||
| dir | 167 | cds | SprT | dir | 393 | cds | hp | |
| dir | 2 | aac | dir | 173 | 16s | |||
| dir | 8 | agc | dir | 233 | 23s | |||
| dir | 30 | gaa | dir | 12 | 5s | |||
| dir | 5 | gac | dir | 1 | aac | |||
| dir | 16 | caa | dir | 17 | tcc | |||
| dir | 77 | aaa | dir | 20 | gaa | |||
| dir | 58 | ctc | dir | 36 | gta | |||
| dir | 9 | cgt | dir | 122 | atgf | |||
| dir | 35 | cca | dir | 28 | gac | |||
| dir | 20 | gga | dir | 8 | ttc | |||
| dir | 97 | atc | dir | 1 | tac | |||
| dir | 173 | 16s | dir | 16 | tgg | |||
| dir | 288 | 23s | dir | 74 | cac | |||
| dir | 21 | 5s | dir | 5 | ggc | |||
| dir | 70 | atgf | dir | 15 | tgc | |||
| dir | 45 | gac | dir | 215 | ttg | |||
| comp | 13 | cds | hp | <>dir | 13 | cds | hp |
bc657
- chromosome
- Met: methionine adenosyltransferase
- integrase: site-specific integrase
- K-ligase: lysine--tRNA ligase
- ISL3: ISL3 family transposase
- regulator: response regulator transcription factor
| bc657 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 16s23s5s | 555 | 62 | ||||||
| 16s23s5s-aac | ||||||||
| 2*16s-gca-235-25, 8aas | ||||||||
| 16s23s5s-12aas | ||||||||
| interc | ||||||||
| comp | 208 | cds | Met | |||||
| comp | 7 | gaa | ||||||
| comp | 24 | agc | dir | 230 | cds | integrase | ||
| comp | 19 | atc | comp | 18 | ttg | |||
| comp | 9 | gga | comp | 41 | tgc | |||
| comp | 4 | ttc | comp | 11 | caa | |||
| comp | 43 | gac | comp | 2 | cac | |||
| comp | 47 | atgf | comp | 5 | tgg | |||
| comp | 16 | tca | comp | 4 | tac | |||
| comp | 13 | gaa | comp | 22 | ttc | |||
| comp | 17 | atc | comp | 3 | gac | |||
| comp | 1 | gga | comp | 13 | gta | |||
| comp | 40 | gac | comp | 11 | gaa | |||
| comp | 47 | atgf | comp | 47 | tcc | |||
| comp | 29 | tca | comp | 5 | aac | |||
| comp | 16 | atgi | comp | 78 | 5s | |||
| comp | 22 | atgj | comp | 218 | 23s | |||
| comp | 14 | gca | comp | 406 | 16s | |||
| comp | 3 | cca | comp | 12 | cds | hp | ||
| comp | 13 | cgt | ||||||
| comp | 15 | tta | ||||||
| comp | 11 | ggc | ||||||
| comp | 11 | aca | ||||||
| comp | 13 | cta | ||||||
| comp | 2 | aaa | ||||||
| comp | 7 | gta | ||||||
| comp | 79 | 5s | ||||||
| comp | 181 | 23s | ||||||
| comp | 60 | gca | ||||||
| comp | 538 | 16s | ||||||
| comp | 26 | cds | K-ligase | |||||
| dir | 40 | cds | ISL3 | |||||
| dir | 69 | rpr | ||||||
| comp | 3 | cca | ||||||
| comp | 13 | cgt | ||||||
| comp | 15 | tta | ||||||
| comp | 11 | ggc | ||||||
| comp | 11 | aca | ||||||
| comp | 13 | cta | ||||||
| comp | 2 | aaa | ||||||
| comp | 7 | gta | ||||||
| comp | 82 | 5s | ||||||
| comp | 181 | 23s | ||||||
| comp | 60 | gca | ||||||
| comp | 596 | 16s | ||||||
| dir | 9 | cds | regulator |
bc658
- chromosome
- MFS: MFS transporter
- Penol: phosphoenolpyruvate carboxylase
- transferase: undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase
- SigmaK: SigmaK-factor processing regulatory protein BofA
| bc658 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 16s23s5s | 555 | 61 | ||||||
| 16s-5s-23s-atgf-ctc-ctg | ||||||||
| 2*16s-5s-atcgca-23s-9,5aas | ||||||||
| 16s-5s-23s-14aas | ||||||||
| interc | ||||||||
| dir | 368 | cds | MFS | |||||
| dir | 101 | 16s | ||||||
| dir | 63 | 5s | comp | 132 | cds | transferase | ||
| dir | 21 | atc | comp | 15 | tac | |||
| dir | 179 | gca | comp | 10 | ttc | |||
| dir | 85 | 23s | comp | 21 | gac | |||
| dir | 3 | aac | comp | 5 | gta | |||
| dir | 24 | acc | comp | 156 | atgj | |||
| dir | 40 | gaa | comp | 166 | 23s | |||
| dir | 6 | caa | comp | 22 | gca | |||
| dir | 9 | aaa | comp | 63 | atc | |||
| dir | 133 | cta | comp | 104 | 5s | |||
| dir | 9 | ggc | comp | 319 | 16s | |||
| dir | 7 | cgt | comp | 7 | cds | SigmaK | ||
| dir | 157 | gga | ||||||
| dir | 11 | cds | Penol | |||||
| dir | 94 | cds | hp | |||||
| comp | 21 | ttg | ||||||
| comp | 15 | cgt | ||||||
| comp | 11 | tgc | ||||||
| comp | 6 | ggc | ||||||
| comp | 10 | caa | ||||||
| comp | 20 | cac | ||||||
| comp | 39 | tgg | ||||||
| comp | 89 | aca | ||||||
| comp | 37 | gac | ||||||
| comp | 41 | atgf | ||||||
| comp | 82 | gta | ||||||
| comp | 18 | gaa | ||||||
| comp | 6 | tcc | ||||||
| comp | 146 | aac | ||||||
| comp | 97 | 23s | ||||||
| comp | 104 | 5s | ||||||
| comp | 378 | 16s | ||||||
| comp | 14 | cds | hp |
bc659
- chromosome
- SprT: SprT family protein
- B1: thiamine-phosphate kinase
- ISL3: ISL3 family transposase
| bc659 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 4*16s23s5s | 777 | 54 | ||||||
| 16atcgca235-aac-acc | ||||||||
| 12aas-16s23s5s-atgf-gac | ||||||||
| 16s23s5s-14aas | ||||||||
| interc | interc | |||||||
| dir | 175 | cds | SprT | dir | 528 | cds | hp | |
| dir | 3 | aac | dir | 329 | 16s | |||
| dir | 7 | agc | dir | 151 | 23s | |||
| dir | 25 | gaa | dir | 36 | 5s | |||
| dir | 5 | gac | dir | 2 | aac | |||
| dir | 263 | caa | dir | 16 | tcc | |||
| dir | 17 | aaa | dir | 4 | gaa | |||
| dir | 34 | cta | dir | 24 | gta | |||
| dir | 58 | ctc | dir | 46 | atgf | |||
| dir | 5 | cgt | dir | 38 | gac | |||
| dir | 33 | cca | dir | 21 | ttc | |||
| dir | 5 | gga | dir | 22 | tac | |||
| dir | 226 | atc | dir | 10 | tgg | |||
| dir | 309 | 16s | dir | 22 | cac | |||
| dir | 119 | 23s | dir | 3 | caa | |||
| dir | 180 | 5s | dir | 9 | ggc | |||
| dir | 131 | atgf | dir | 7 | tgc | |||
| dir | 211 | gac | dir | 219 | ttg | |||
| dir | 14 | cds | B1 | dir | 14 | cds | ISL3 |
bc660
- chromosome
- K-ligase: lysine--tRNA ligase
| bc660 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 16atcgca235 | 766 | 75 | ||||||
| 16s23s5s | ||||||||
| 16s23s5s-6aas:gta-gac-tgg-cac-ttg-cca | ||||||||
| 2*16atcgca235-17aas, 4aas-5s-aac | ||||||||
| gga-16atcgca235-gta | ||||||||
| interc | ||||||||
| dir | 434 | cds | K-ligase | |||||
| dir | 84 | 16s | ||||||
| dir | 6 | atc | ||||||
| dir | 202 | gca | interc | |||||
| dir | 103 | 23s | dir | 452 | cds | hp | ||
| dir | 4 | 5s | dir | 84 | 16s | |||
| dir | 2 | gta | dir | 6 | other | |||
| dir | 42 | aaa | dir | 203 | gca | |||
| dir | 76 | aca | dir | 90 | 23s | |||
| dir | 8 | tta | dir | 5 | 5s | |||
| dir | 37 | cgt | dir | 8 | aac | |||
| dir | 26 | cca | dir | 82 | acg | |||
| dir | 24 | atgj | dir | 33 | gta | |||
| dir | 35 | tca | dir | 139 | aca | |||
| dir | 3 | atgf | dir | 5 | 5s | |||
| dir | 8 | gac | dir | 63 | aac | |||
| dir | 40 | ttc | dir | 7 | cds | hp | ||
| dir | 17 | gga | ||||||
| dir | 17 | gga | ||||||
| dir | 16 | gga | ||||||
| dir | 4 | gga | ||||||
| dir | 42 | atc | ||||||
| dir | 71 | agc | ||||||
| dir | 19 | cds | hp |
génomes clostridia
- Lien tableur: génomes clostridia
cd001 cd002 cd003 cd011 cd032 cd045 cd047 cd063 cd064 cd079 cd084 cd092 cd102 cd112 cd113 cd114 cd116 cd118 cd133 cd136 cd153 cd155 cd160 cd161 cd170
cd001
- chromosome
| cd001 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 3*16s23s5s | 655 | 62 | ||
| 16s-gcaatc-235-6aas | ||||
| 5aas-16s-gcaatc-235-6aas | ||||
| 5s | ||||
| interc | interc | |||
| 226 | aaa | 169 | aaa | |
| 22 | tac | 23 | tac | |
| 77 | aca | 163 | aca | |
| 15 | gac | 15 | gac | |
| 53 | gaa | 53 | gaa | |
| 11 | aac | 11 | aac | |
| 346 | 5s | 346 | 5s | |
| 333 | 23s | 330 | 23s | |
| 18 | atc | 18 | atc | |
| 245 | gca | 92 | gca | |
| 268 | 16s | 8 | 16s | |
| 9 | tgc | |||
| 6 | ggc | |||
| 311 | ttc | |||
| 12 | gac | |||
| 13 | gta |
cd002
- chromosome
| cd002 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 16atcgca235 | 555 | 67 | ||
| 16atcgca235-6aas | ||||
| 3*16s23s5s-12,9,4 aas | ||||
| interc | interc | |||
| 80 | 16s | 109 | 16s | |
| 20 | atc | 109 | 23s | |
| 53 | gca | 28 | v5s | |
| 109 | 23s | 9 | caa | |
| 27 | 5s | 117 | gaa | |
| 9 | aac | 5 | gta | |
| 132 | caa | 3 | gac | |
| 5 | gta | 8 | aca | |
| 3 | gac | 17 | aaa | |
| 8 | aca | 57 | atgf | |
| 8 | aaa | 16 | ttc | |
| 10 | cta | |||
| 30 | cca | 8 | gga | |
| 56 | gga | 13 | aga | |
| 17 | atgf | 12 | cac | |
| 8 | aaa | |||
| 3 | aca | 109 | 16s | |
| 5 | gac | 109 | 23s | |
| 132 | gta | 28 | 5s | |
| 8 | gaa | 8 | caa | |
| 28 | caa | 139 | gaa | |
| 109 | 5s | 7 | tac | |
| 109 | 23s | 4 | ggc | |
| 9 | 16s |
cd003
- cd003 11,10,10 chromosome 110 tRNAs
- 3*16s23s5s
- 16-gca-2355
- 16-atc-235
- 3*16s23s5s-22,13,9aas
- 2*16-gca-235,22,13aas
- beCoA: bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
- 2pK: two pore domain potassium channel family protein
- Aspam: aspartate aminotransferase family protein
| cd003 | long | inter | |||||||
| comp | 1538 | 315 | 16s | suite1 | |||||
| comp | 74 | 8 | gga | ||||||
| comp | 76 | 13 | aca | ||||||
| comp | 77 | 12 | gac | long | interc | ||||
| comp | 77 | 83 | atgf | dir | 909 | 505 | cds | beCoA | |
| comp | 76 | 77 | atgj | dir | 1538 | 61 | 16s | ||
| comp | 76 | 9 | ttc | dir | 76 | 290 | gca | ||
| comp | 77 | 5 | atc | dir | 2938 | 179 | 23s | ||
| comp | 77 | 6 | cca | dir | 117 | 8 | 5s | ||
| comp | 76 | 22 | tgg | dir | 75 | 5 | aac | ||
| comp | 77 | 14 | atgi | dir | 89 | 15 | tta | ||
| comp | 77 | 9 | cca | dir | 76 | 5 | atgf | ||
| comp | 92 | 14 | agc | dir | 77 | 9 | atgj | ||
| comp | 89 | 8 | tca | dir | 75 | 8 | gaa | ||
| comp | 76 | 4 | aaa | dir | 76 | 125 | gta | ||
| comp | 76 | 6 | caa | dir | 77 | 69 | gac | ||
| comp | 77 | 8 | aga | dir | 85 | 39 | tac | ||
| comp | 74 | 8 | gga | dir | 83 | 321 | cta | ||
| comp | 76 | 13 | aca | dir | 75 | 12 | ggc | ||
| comp | 77 | 125 | gac | dir | 76 | 12 | cac | ||
| comp | 76 | 12 | gta | dir | 75 | 4 | tgc | ||
| comp | 75 | 6 | gaa | dir | 77 | 642 | cgt | ||
| comp | 76 | 68 | atgf | comp | 261 | 14 | cds | hp | |
| comp | 117 | 126 | 5s | ||||||
| comp | 2938 | 248 | 23s | ||||||
| comp | 1538 | 589 | 16s | ||||||
| dir | 819 | 22 | cds | 2pK | |||||
| long | interc | ||||||||
| dir | 819 | 135 | cds | 2pK | |||||
| comp | 74 | 36 | gga | long | interc | ||||
| comp | 77 | 83 | atgj | comp | 1422 | 126 | cds | Aspam | |
| comp | 76 | 77 | atgf | comp | 76 | 9 | ttc | ||
| comp | 76 | 9 | ttc | comp | 77 | 5 | atc | ||
| comp | 77 | 5 | atc | comp | 76 | 4 | aaa | ||
| comp | 77 | 6 | cca | comp | 75 | 27 | ggc | ||
| comp | 76 | 22 | tgg | comp | 83 | 137 | cta | ||
| comp | 77 | 14 | atgi | comp | 85 | 12 | tac | ||
| comp | 77 | 9 | cca | comp | 76 | 13 | aca | ||
| comp | 92 | 14 | agc | comp | 77 | 126 | gac | ||
| comp | 89 | 8 | cta | comp | 76 | 12 | gta | ||
| comp | 76 | 4 | aaa | comp | 75 | 6 | gaa | ||
| comp | 75 | 27 | ggc | comp | 76 | 15 | atgf | ||
| comp | 83 | 84 | cta | comp | 89 | 5 | tta | ||
| comp | 85 | 12 | tac | comp | 75 | 8 | aac | ||
| comp | 76 | 13 | aca | comp | 117 | 126 | 5s | ||
| comp | 77 | 125 | gac | comp | 2938 | 349 | 23s | ||
| comp | 76 | 12 | gta | comp | 1538 | 13 | 16s | suite1 | |
| comp | 75 | 6 | gaa | ||||||
| comp | 76 | 14 | atgf | comp | 1538 | 378 | 16s | suite2 | |
| comp | 89 | 5 | tta | comp | 76 | 9 | ttc | ||
| comp | 75 | 8 | aac | comp | 77 | 4 | atc | ||
| comp | 117 | 179 | 5s | comp | 76 | 4 | aaa | ||
| comp | 2938 | 166 | 23s | comp | 76 | 6 | caa | ||
| comp | 76 | 61 | gca | comp | 77 | 8 | aga | ||
| comp | 1538 | 23 | 16s | suite2 | comp | 74 | 8 | gga | |
| comp | 76 | 133 | aca | ||||||
| comp | 76 | 12 | gta | ||||||
| comp | 75 | 4 | gaa | ||||||
| comp | 117 | 161 | 5s | ||||||
| comp | 2938 | 381 | 23s | ||||||
| comp | 1538 | 472 | 16s | ||||||
| comp | 387 | 9 | cds | hp |
cd011
- chromosome
| cd011 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 16s5s23s | 666 | 51 | ||
| 16s5s23s-gac-aca | ||||
| 16s5s-atc-23s | ||||
| agc-16s5s23s-6aas | ||||
| tca-tcc-16s5s23s-5aas | ||||
| 16s5s-gca-23s-aac-gaa-tgc | ||||
| interc | interc | |||
| 510 | agc | 59 | tca | |
| 61 | 16s | 156 | tcc | |
| 256 | 5s | 61 | 16s | |
| 76 | 23s | 256 | 5s | |
| 34 | gac | 77 | 23s | |
| 30 | gta | 41 | aac | |
| 6 | aca | 5 | gaa | |
| 66 | tac | 36 | atgi | |
| 6 | atgf | 57 | gta | |
| 7 | ttc | 7 | tta | |
| 61 | 16s | |||
| 5 | 5s | |||
| 212 | gca | |||
| 113 | 23s | |||
| 43 | aac | |||
| 13 | gaa | |||
| 4 | tgc |
cd032
- chromosome
- tRNAs: 70 obsolète, c'est 93
| cd032 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 7*16s23s5s | 17,16,16 | 70 | ||
| NCBI et gtRNAdb ne concordent pas. | ||||
| 2*16s23s5s-atgi-gca | ||||
| 16s23s5s-ttc-gac-gaa | ||||
| 2*16s23s-aac-5s | ||||
| 16s-atc-23s-aac | ||||
| 5s-ttc | ||||
| 16s-gca-23s5s | ||||
| 16235-aaa-cds-5s-aaa | ||||
| 16s-gcaatc-23s5s-ttc-tgc | ||||
| interc | long aas | |||
| 190 | 250 | cds | direct | |
| 5 | aaa | comp | ||
| 159 | 5s | comp | ||
| 294 | 316 | cds | comp | |
| 7 | aaa | comp | ||
| 138 | 5s | comp | ||
| 339 | 23s | comp | ||
| 771 | 16s | comp | ||
| 2 | 371 | cds | comp | |
| 543 | 341 | cds | comp | |
| 140 | 16s | direct | ||
| 3 | gca | direct | ||
| 111 | atc | direct | ||
| 70 | 23s | direct | ||
| 5 | 5s | direct | ||
| 4 | ttc | direct | ||
| 167 | tgc | direct | ||
| 4 | 99 | cds | direct |
cd045
- chromosome
| cd045 | rRNAs | tRNAs |
|---|---|---|
| 3*16s23s5s | 10,10,10 | 87 |
| 16s23s5s-atgi-gca | ||
| 16s23s5s-aaa | ||
| 16s23s-aac-5s-aac | ||
| 16s23s5s-ttc-5s-ttc-aaa | ||
| 16s-gca-atc-235-6aas | ||
| gca-atc-gga-16s23s5s | ||
| 16s-gca-atc-23s-aac | ||
| interc | ||
| 61 | gag | |
| 6 | caa | |
| 4 | aga | |
| 19 | gga | |
| 16 | cta | |
| 4 | gaa | |
| 97 | 5s | |
| 94 | 23s | |
| 3 | atc | |
| 74 | gca | |
| 8 | 16s |
cd047
- chromosome
| cd047 | rRNAs | tRNAs | |
|---|---|---|---|
| 16s23s5s | 554 | 53 | |
| 16s23s5s-aac | |||
| 16s23s5s-ttc | |||
| 16s23s5s-aac-aac | |||
| 16s5s-atgi-gca | |||
| interc | long | ||
| 3 | gca | ||
| 8 | atgi | ||
| 79 | 5s | ||
| 117 | 16s | ||
| 2 | cds | 108 pb |
cd063
- chromosome
- SfsA: DNA/RNA nuclease SfsA
| cd063 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 4*16s23s5s | 10,10,10 | 81 | ||
| 16s23s-aac-5s-aac | ||||
| 16-gca-atc-23-aac | ||||
| 16s23s5s-ttc-5s-ttc-aaa | ||||
| 16s23s5s-aaa | ||||
| 16s23s5s-atgi-gca | ||||
| 16-gca-atc-235-6 aas | ||||
| interc | ||||
| comp | 237 | cds | SfsA | |
| comp | 53 | gag | ||
| comp | 6 | caa | ||
| comp | 5 | aga | ||
| comp | 14 | gga | ||
| comp | 17 | cta | ||
| comp | 6 | gaa | ||
| comp | 24 | 5s | ||
| comp | 127 | 23s | ||
| comp | 3 | atc | ||
| comp | 80 | gca | ||
| comp | 405 | 16s | ||
| comp | 8 | cds | hp |
cd064
- chromosome
- sigmaK: pro-sigmaK processing inhibitor BofA
- SfsA: DNA/RNA nuclease SfsA
| cd064 | rRNAs | tRNAs | |||
|---|---|---|---|---|---|
| 16s23s5s | 999 | 77 | |||
| 16s23s5s-atgi-gca | |||||
| 2*16s23s5s-aaa | |||||
| 16s23s5s-ttc | |||||
| 16-atc-235-ttc-tgc | |||||
| 16s23s5s-aac | |||||
| atgi-gca-16s23s5s-aac | |||||
| 16s23s5s-5aas | |||||
| long | interc | ||||
| dir | 255 | 844 | cds | sigmaK | |
| dir | 1513 | 235 | 16s | ||
| dir | 2907 | 118 | 23s | ||
| dir | 117 | 26 | 5s | ||
| dir | 75 | 62 | gaa | ||
| dir | 84 | 7 | cta | ||
| dir | 75 | 7 | ggc | ||
| dir | 74 | 3 | gga | ||
| dir | 77 | 509 | aga | ||
| dir | 693 | 5 | cds | SfsA |
cd079
- chromosome
| cd079 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 16s23s5s-atgi-gca | 546 | 53 | ||
| 16s23s5s-aaa | ||||
| 16s23s5s-ttc | ||||
| 16s-atc-23s | ||||
| 16s°-atc-235-atgi-gca | ||||
| 23s5s-aaa | ||||
| interc | long | |||
| 200 | 2848 | 23s | comp | |
| 66 | atc | comp | ||
| 166 | 553 | 16s° | comp | |
| 6 | gca | comp | ||
| 6 | atgi | comp | ||
| 107 | 117 | 5s | comp | |
| 200 | 2822 | 23s | comp | |
| 66 | atc | comp | ||
| 3 | 1467 | 16s | comp |
cd084
- chromosome
- cds: MLMPSVAHFNIAPSMARRSLSLFAIHGIAILEHPCSLKTAQREKQNAKCESKDNEMAFKF
| cd084 | rRNAs | tRNAs |
|---|---|---|
| 2*16-gca-235 | 444 | 54 |
| 16s23s5s | ||
| 16atcgca-cds-235 |
cd092
- chromosome
- cobI: cob(I)yrinic acid a,c-diamide adenosyltransferase
| cd092 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 5*16s23s5s | 898 | 68 | ||
| 2*16atcgca235 | ||||
| 16-gca-235 | ||||
| 8aas-16s | ||||
| comp | 456 | cds | cobI | |
| comp | 4 | tta | ||
| comp | 11 | tgc | ||
| comp | 1 | gga | ||
| comp | 7 | aac | ||
| comp | 61 | agc | ||
| comp | 6 | acc | ||
| comp | 6 | tca | ||
| comp | 215 | gac | ||
| comp | 47 | 16s | ||
| dir | 8 | cds | hp |
cd102
- chromosome
| cd102 | rRNAs | tRNAs | |||||||
|---|---|---|---|---|---|---|---|---|---|
| 2*16-gca-235 | 777 | 69 | |||||||
| 2*16s23s5s | |||||||||
| 2*16-gca-235-22,21aas | |||||||||
| 16s23s5s-8aas | |||||||||
| interc | long | interc | long | interc | long | ||||
| 356 | 1911 | cds | 415 | 1605 | cds | 196 | 828 | cds | |
| 65 | 1534 | 16s | 65 | 1534 | 16s | 5 | gga | ||
| 34 | gca | 34 | gca | 27 | ggc | ||||
| 93 | 2916 | 23s | 93 | 2916 | 23s | 79 | cta | ||
| 5 | 117 | 5s | 5 | 117 | 5s | 11 | tac | ||
| 17 | aac | 11 | aac | 6 | aca | ||||
| 7 | atgf | 15 | tta | 6 | gac | ||||
| 17 | gaa | 7 | atgf | 16 | gta | ||||
| 5 | gta | 17 | gaa | 5 | gaa | ||||
| 9 | gac | 5 | gta | 93 | 117 | 5s | |||
| 5 | aca | 49 | gac | 82 | 2916 | 23s | |||
| 7 | tac | 8 | aca | 510 | 1534 | 16s | |||
| 9 | gga | 24 | cta | 8 | 888 | cds | |||
| 10 | aga | 9 | ggc | ||||||
| 8 | caa | 23 | aga | ||||||
| 34 | aaa | 9 | caa | ||||||
| 7 | tca | 11 | aaa | ||||||
| 25 | ttc | 24 | tca | ||||||
| 4 | atgj | 5 | agc | ||||||
| 29 | atgi | 7 | cca | ||||||
| 9 | cca | 25 | atc | ||||||
| 9 | cac | 40 | atgi | ||||||
| 8 | aaa | 6 | tgg | ||||||
| 16 | tgc | 47 | cca | ||||||
| 22 | cta | 6 | atgi | ||||||
| 88 | cgt | 34 | ttc | ||||||
| 22 | 279 | cds | 23 | atgj |
cd112
- chromosome
- tcc-16s-cds-235-19aas hp ci-dessous
- - MRKEGAYKRYVTDRRRNPTKKIPKSEARKVFLKRRRSVKHCNFTESKREQTKAIQSERKQAENNKFSKVKTFTRYFFVNSRRMMRREGVYINT
- 16s-cds-235 cds ci-dessous
- - MRKEGAYKRYVTDRRRNPTKKIPKSEARKVFLKRRRSVKHCNFTESKREQTKAIQSERKQAENNKFSKVKTFTRYFFVNSRRMMRREGVYINT
- tcg-16s23s-gca-5s-12aas
- - 50S ribosomal protein L32 ci-dessous
- - MAVPKRKTAKSATRSRRSANMKMTAKTLVKCSNCGEFALPHHVCAECGHYKGREVIAK
- DUF2232: DUF2232 domain-containing protein
- nucD: nucleoside deaminase
- CDP-arc: CDP-archaeol synthase
- PL32: 50S ribosomal protein L32
| cd112 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 16s23s-gca-5s-gta-tac-gga-cga | 444 | 48 | ||||||
| tcc-16s-cds-235-19aas | ||||||||
| 16s-cds-235 | ||||||||
| tcg-16s23s-gca-5s-12aas | ||||||||
| interc | interc | |||||||
| comp | 403 | cds | DUF2232 | comp | 118 | cds | CDP-arc | |
| comp | 109 | agg | comp | 57 | tgg | |||
| comp | 6 | tgc | comp | 6 | atc | |||
| comp | 41 | cac | comp | 13 | cca | |||
| comp | 9 | atgi | comp | 26 | agc | |||
| comp | 14 | atgj | comp | 16 | aag | |||
| comp | 4 | ttc | comp | 18 | aaa | |||
| comp | 15 | tca | comp | 63 | gga | |||
| comp | 4 | aaa | comp | 10 | tac | |||
| comp | 10 | caa | comp | 28 | aca | |||
| comp | 11 | aga | comp | 5 | gac | |||
| comp | 6 | ggc | comp | 35 | gta | |||
| comp | 6 | cta | comp | 5 | gaa | |||
| comp | 28 | aca | comp | 172 | 5s | |||
| comp | 5 | gac | comp | 62 | gca | |||
| comp | 35 | gta | comp | 606 | 23s | |||
| comp | 2 | gaa | comp | 495 | 16s | |||
| comp | 7 | atgf | comp | 200 | tcg | |||
| comp | 8 | tta | Comp | 14 | cds | PL32 | ||
| comp | 29 | aac | ||||||
| comp | 234 | 5s | ||||||
| comp | 54 | 23s | ||||||
| comp | 253 | cds | hp | |||||
| comp | 841 | 16s | ||||||
| comp | 54 | tcc | ||||||
| Comp | 20 | cds | nucD |
cd113
- chromosome
- pepb: peptidoglycan-binding protein
- prepilin: prepilin-type N-terminal cleavage/methylation domain-containing protein
| cd113 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 16s-atc-235 | 444 | 48 | ||||||
| 16s23s5s | ||||||||
| 16s-gca-235-11 aas | ||||||||
| 16s-gca-235-18 aas | ||||||||
| interc | interc | |||||||
| dir | 337 | cds | pepb | dir | 430 | cds | aminopeptidase | |
| dir | 42 | 16s | dir | 42 | 16s | |||
| dir | 124 | gca | dir | 124 | gca | |||
| dir | 43 | 23s | dir | 43 | 23s | |||
| dir | 318 | 5s | dir | 193 | 5s | |||
| dir | 3 | aac | dir | 3 | aac | |||
| dir | 4 | tta | dir | 4 | tta | |||
| dir | 26 | atgf | dir | 129 | atgf | |||
| dir | 101 | atgj | dir | 7 | gaa | |||
| dir | 7 | gaa | dir | 41 | gta | |||
| dir | 41 | gta | dir | 5 | gac | |||
| dir | 5 | gac | dir | 23 | aca | |||
| dir | 23 | aca | dir | 35 | tac | |||
| dir | 11 | tac | dir | 5 | gga | |||
| dir | 39 | ggc | dir | 7 | aga | |||
| dir | 875 | cgt | dir | 4 | gaa | |||
| dir | 12 | cds | hp 4904 aas!! | dir | 5 | aaa | ||
| dir | 19 | tca | ||||||
| dir | 20 | agc | ||||||
| dir | 69 | atgi | ||||||
| dir | 0 | ttc | ||||||
| dir | 135 | tgg | ||||||
| dir | 86 | cgg | ||||||
| comp | 19 | cds | prepilin |
cd114
- chromosome
- Alag: alanine--glyoxylate aminotransferase family protein
- D-alanyl: D-alanyl-D-alanine carboxypeptidase
| cd114 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 16atcgca235 | 444 | 59 | ||
| 2*16atcgca235-acc | ||||
| 16s23s5s-13 aas | ||||
| comp | 184 | cds | Alag | |
| comp | 4 | ggc | ||
| comp | 48 | tac | ||
| comp | 8 | gcc | ||
| comp | 6 | acc | ||
| comp | 74 | gac | ||
| comp | 29 | gta | ||
| comp | 11 | gaa | ||
| comp | 11 | agc | ||
| comp | 12 | atgj | ||
| comp | 36 | gga | ||
| comp | 8 | atgf | ||
| comp | 20 | aaa | ||
| comp | 29 | caa | ||
| comp | 32 | 5s | ||
| comp | 94 | 23s | ||
| comp | 680 | 16s | ||
| comp | 13 | cds | D-alanyl |
cd116
- chromosome
- SppA : signal peptide peptidase SppA
- MnmAa : tRNA 2-thiouridine(34) synthase MnmA assembly pathway, ATPase PilB
- MnmA : tRNA 2-thiouridine(34) synthase MnmA
| cd116 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 16s23s5s-aac | 555 | 78 | ||
| 16s23s5s-caa-gaa-tac-ggc | ||||
| 16atcgca235-acc | ||||
| 16s23s5s-8 aas | ||||
| 16s23s5s-21 aas | ||||
| interc | ||||
| comp | 381 | cds | hp | |
| dir | 95 | 16s | ||
| dir | 89 | 23s | ||
| dir | 76 | 5s | ||
| dir | 22 | caa | ||
| dir | 54 | gaa | ||
| dir | 128 | gta | ||
| dir | 4 | gac | ||
| dir | 6 | aca | ||
| dir | 18 | aaa | ||
| dir | 4 | gga | ||
| dir | 150 | cca | ||
| dir | 8 | cds | SppA | |
| comp | 110 | cds | MnmAa | |
| comp | 131 | riboswitch | ||
| comp | 133 | cac | ||
| comp | 9 | aga | ||
| comp | 13 | gga | ||
| comp | 13 | ttc | ||
| comp | 4 | atgf | ||
| comp | 10 | aaa | ||
| comp | 18 | gcc | ||
| comp | 54 | gta | ||
| comp | 39 | gaa | ||
| comp | 133 | cac | ||
| comp | 9 | aga | ||
| comp | 7 | gga | ||
| comp | 13 | cta | ||
| comp | 13 | ttc | ||
| comp | 4 | atgf | ||
| comp | 6 | aaa | ||
| comp | 4 | aca | ||
| comp | 5 | gac | ||
| comp | 55 | gta | ||
| comp | 22 | gaa | ||
| comp | 76 | caa | ||
| comp | 90 | 5s | ||
| comp | 95 | 23s | ||
| comp | 404 | 16s | ||
| comp | 21 | cds | MnmA |
cd118
- chromosome
- blocs rares 16s5s-gcc-23s
| cd118 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 2*16s5s-gcc-23s | 10,10,10 | 109 | ||||||
| 16s5s-gcc-23s-19aas | ||||||||
| 16s5s-gcc-23s-5aas | ||||||||
| 16s5s23s-aaa-acc-ctc | ||||||||
| 16s5s-atc-23s-aac | ||||||||
| 16s5s-atcgca-23s-aac-atgf | ||||||||
| 15aas-16s5s-atcgca-23s | ||||||||
| cgg-tgg-16s5s-gcc-23s-5aas | ||||||||
| ttc-cds-16s5s-atc-23s-aac-atgf | ||||||||
| interc | interc | interc | interc | |||||
| 541 | cds | 260 | cds | 219 | cds | 487 | cds | |
| 253 | 16s | 5 | gac | 236 | 23s | 252 | 16s | |
| 64 | 5s | 10 | gta | 6 | gca | 64 | 5s | |
| 234 | gcc | 4 | gaa | 64 | atc | 6 | atc | |
| 119 | 23s | 18 | aaa | 328 | 5s | 229 | gca | |
| 6 | tcc | 103 | caa | 505 | 16s | 112 | 23s | |
| 10 | ccg | 237 | 23s | 1 | ggc | 6 | aac | |
| 14 | gga | 64 | gcc | 32 | ctg | 243 | atgf | |
| 1 | cac | 328 | 5s | 42 | ccc | 4 | cds | |
| 9 | tgc | 651 | 16s | 4 | cgt | |||
| 3 | gtc | 6 | cds | 120 | ggc | 155 | cds | |
| 6 | ttc | 42 | atgj | 213 | ttc | |||
| 4 | tac | 439 | cds | 16 | agc | 563 | cds | |
| 17 | caa | 237 | 23s | 6 | atgf | 252 | 16s | |
| 4 | aaa | 64 | gcc | 7 | aac | 64 | 5s | |
| 5 | gaa | 328 | 5s | 4 | gaa | 141 | atc | |
| 5 | gta | 460 | 16s | 18 | aaa | 100 | 23s | |
| 7 | gac | 5 | tgg | 4 | caa | 6 | aac | |
| 43 | agc | 207 | cgg | 91 | tac | 102 | atgf | |
| 30 | ccc | 3 | cds | 7 | gtc | 4 | cds | |
| 3 | ctg | 325 | tgc | |||||
| 4 | ggc | 464 | cds | 17 | cds | 704 | cds | |
| 4 | cgt | 327 | 16s | 252 | 16s | |||
| 352 | acc | 226 | 5s | 64 | 5s | |||
| 20 | cds | 98 | 23s | 194 | atc | |||
| 4 | aaa | 112 | 23s | |||||
| 8 | acc | 109 | aac | |||||
| 89 | ctc | 2 | cds | |||||
| 3 | cds |
cd133
- chromosome
- CwlD: N-acetylmuramoyl-L-alanine amidase CwlD
- glycosyl: glycosyl transferase
- B6: pyridoxal phosphate-dependent aminotransferase
- anar: anaerobic ribonucleoside triphosphate reductase
- anara: anaerobic ribonucleoside-triphosphate reductase activating protein
- TIGR00159: TIGR00159 family protein
| cd133 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 3*16s23s5s | 9,10,10 | 85 | ||||||
| 2*16s-gca-235 | ||||||||
| 16s23s-gga-5s | ||||||||
| 16s23s5s-43aas | ||||||||
| 16s23s5s-18aas | ||||||||
| 16s-gca-235-9aas | ||||||||
| 16s23s-aca | ||||||||
| long | interc | long | interc | |||||
| 1206 | 505 | cds | glycosyl | 705 | 281 | cds | CwlD | |
| 1508 | 279 | 16s | 1509 | 279 | 16s | |||
| 2900 | 180 | 23s | 2901 | 131 | 23s | |||
| 117 | 6 | 5s | 117 | 6 | 5s | |||
| 75 | 6 | aac | 75 | 4 | aac | |||
| 86 | 15 | tta | 75 | 5 | gaa | |||
| 76 | 7 | atgf | 76 | 5 | gta | |||
| 75 | 9 | gaa | 77 | 10 | gac | |||
| 74 | 5 | gga | 75 | 14 | aca | |||
| 76 | 5 | gta | 85 | 9 | tac | |||
| 77 | 9 | gac | 74 | 10 | gga | |||
| 75 | 14 | aca | 77 | 9 | aga | |||
| 85 | 8 | tac | 76 | 11 | caa | |||
| 84 | 29 | cta | 76 | 2 | aaa | |||
| 77 | 7 | aga | 89 | 17 | tca | |||
| 76 | 88 | caa | 91 | 8 | agc | |||
| 89 | 3 | tca | 77 | 85 | cca | |||
| 76 | 6 | ttc | 76 | 60 | tgg | |||
| 77 | 11 | atgj | 77 | 6 | cca | |||
| 77 | 23 | atgi | 77 | 3 | atc | |||
| 77 | 7 | cca | 76 | 7 | ttc | |||
| 77 | 8 | cac | 77 | 114 | atg | 18 | ||
| 76 | 7 | aaa | 1391 | 68 | 16s | |||
| 74 | 6 | tgc | 76 | 271 | gca | |||
| 75 | 5 | aac | 2900 | 126 | 23s | |||
| 86 | 15 | tta | 117 | 213 | 5s | |||
| 76 | 7 | atgf | 1185 | 372 | cds | B6 | ||
| 75 | 9 | gaa | 2352 | 21 | cds | anar | ||
| 74 | 5 | gga | 540 | 776 | cds | anara | ||
| 76 | 5 | gta | 1508 | 52 | 16s | |||
| 77 | 9 | gac | 76 | 373 | gca | |||
| 75 | 14 | aca | 2900 | 126 | 23s | |||
| 85 | 9 | tac | 117 | 7 | 5s | |||
| 84 | 23 | cta | 75 | 5 | aac | |||
| 75 | 24 | ggc | 86 | 15 | tta | |||
| 77 | 9 | aga | 76 | 7 | atgf | |||
| 76 | 8 | caa | 75 | 14 | gaa | |||
| 76 | 2 | aaa | 74 | 5 | gga | |||
| 89 | 3 | tca | 76 | 5 | gta | |||
| 76 | 6 | ttc | 77 | 10 | gac | |||
| 77 | 11 | atgj | 75 | 9 | ggc | |||
| 77 | 17 | atgi | 74 | 975 | aga | |||
| 77 | 8 | cac | 840 | 10 | cds | TIGR00159 | ||
| 76 | 7 | aaa | ||||||
| 74 | 7 | tgc | ||||||
| 77 | 12 | cgt | ||||||
| 76 | 75 | gta | ||||||
| 414 | 43 | cds | hp |
cd136
- chromosome
- Légende
- - s° ribosomal RNA rRNA prediction is too short
- - s’ possible 23S ribosomal RNA but does not have good blast hits on one or both of the ends
- Y-rec1: tyrosine-type recombinase/integrase
- helix: helix-turn-helix domain-containing protein
- SigB1: SigB/SigF/SigG family RNA polymerase sigma factor
- xylose: xylose isomerase
- NadR: transcription repressor NadR
- A-1 chlor: type A-1 chloramphenicol O-acetyltransferase
- SigB2: B/F/G family RNA polymerase sigma-70 factor
- B6: pyridoxal phosphate-dependent aminotransferase
- anar: anaerobic ribonucleoside triphosphate reductase
- anara: anaerobic ribonucleoside-triphosphate reductase activating protein
- pyruvate: pyruvate carboxylase
- Phagep: phage portal protein
- CwlD: N-acetylmuramoyl-L-alanine amidase CwlD
- TIGR00159: TIGR00159 family protein
| cd136 | rRNAs | tRNAs | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 3*16s23s5s | 14,16,13 | 110 | ||||||||
| 16s’-gca-23s°-16s°-23s 16s°-gca-23s’ | ||||||||||
| 16s23s-gga-5s | ||||||||||
| 16s23s-aca | ||||||||||
| 16s-cds-23s°-5s-43aas | ||||||||||
| cds-cds-23s°-5s-18aas | ||||||||||
| 16s°-23s°-5s-9aas | ||||||||||
| 16s23s5s-19aas | 16s | 14 | ||||||||
| 16s23s5s-tta-atgi | 16s’ | 2 | ||||||||
| 16s23s5s | 16s° | 5 | ||||||||
| 16’-gca-235-tta-atgi | 23s | 10 | ||||||||
| 23s5s | 23s’ | 3 | ||||||||
| 16s | 23s° | 11 | ||||||||
| 16s23s°-cds | 5s | 14 | ||||||||
| 3*16s-23s° | ||||||||||
| 16s°-23s°-23s’-5s | ||||||||||
| 23s°-5s | ||||||||||
| 16s°gca-23s° | ||||||||||
| long | interc | long | interc | |||||||
| dir | 774 | 179 | cds | SigB1 | ||||||
| dir | 645 | 214 | cds | Y-rec1 | dir | 1438 | 161 | 16s | ||
| dir | 459 | 554 | cds | helix | comp | 117 | 201 | 5s | ||
| dir | 1740 | 0 | cds | hp | comp | 2893 | 217 | 23s | ||
| dir | 204 | 168 | cds | hp | comp | 1508 | 108 | 16s | ||
| dir | 827 | 133 | 23s° | comp | 77 | 11 | atgi | |||
| dir | 117 | 7 | 5s | comp | 89 | 5 | tta | |||
| dir | 75 | 5 | aac | comp | 117 | 201 | 5s | |||
| dir | 75 | 6 | gaa | comp | 2900 | 375 | 23s | |||
| dir | 76 | 6 | gta | comp | 76 | 52 | gca | |||
| dir | 77 | 12 | gac | comp | 1264 | 100 | 16s’ | |||
| dir | 75 | 15 | aca | dir | 1166 | 52 | 16s’ | |||
| dir | 85 | 10 | tac | dir | 76 | 248 | gca | |||
| dir | 74 | 11 | gga | dir | 596 | 100 | 23s° | |||
| dir | 77 | 10 | aga | dir | 577 | 321 | 16s° | |||
| dir | 76 | 12 | caa | dir | 2228 | 100 | 23s | |||
| dir | 76 | 3 | aaa | dir | 568 | 320 | 16s° | |||
| dir | 89 | 19 | tca | dir | 1633 | 100 | 23s° | |||
| dir | 91 | 9 | agc | dir | 2449 | 126 | 23s’ | |||
| dir | 77 | 86 | cca | dir | 117 | 127 | 5s | |||
| dir | 76 | 61 | tgg | dir | 510 | cds | NadR | |||
| dir | 77 | 6 | cca | |||||||
| dir | 77 | 4 | atc | comp | 660 | 228 | cds | A-1 chlor | ||
| dir | 76 | 8 | ttc | dir | 1351 | 321 | 16s | |||
| dir | 77 | 115 | atgj | 18 | dir | 488 | 101 | 23s° | ||
| dir | 1198 | 1 | 16s | comp | 1420 | 250 | 23s° | |||
| dir | 687 | 100 | cds | xylose | comp | 76 | 52 | gca | ||
| dir | 796 | 182 | 23s° | comp | 564 | 100 | 16s° | |||
| dir | 117 | 7 | 5s | comp | 285 | 217 | 23s° | |||
| dir | 75 | 7 | aac | comp | 1508 | 179 | 16s | |||
| dir | 86 | 16 | tta | >comp | 446 | 386 | cds | SigB2 | ||
| dir | 76 | 8 | atgf | dir | 1508 | 321 | 16s | |||
| dir | 75 | 10 | gaa | dir | 2900 | 181 | 23s | |||
| dir | 74 | 6 | gga | dir | 117 | 6 | 5s | |||
| dir | 76 | 6 | gta | dir | 75 | 6 | aac | |||
| dir | 77 | 10 | gac | dir | 86 | 15 | tta | |||
| dir | 75 | 15 | aca | dir | 76 | 7 | atgf | |||
| dir | 85 | 11 | tac | dir | 75 | 9 | gaa | |||
| dir | 84 | 29 | cta | dir | 74 | 5 | gga | |||
| dir | 77 | 8 | aga | dir | 76 | 5 | gta | |||
| dir | 76 | 90 | caa | dir | 77 | 9 | gac | |||
| dir | 89 | 4 | tca | dir | 75 | 14 | aca | |||
| dir | 76 | 7 | ttc | dir | 85 | 10 | tac | |||
| dir | 77 | 12 | atgj | dir | 84 | 28 | cta | |||
| dir | 77 | 30 | atgi | dir | 77 | 7 | aga | |||
| dir | 77 | 8 | cca | dir | 76 | 89 | caa | |||
| dir | 77 | 9 | aca | dir | 89 | 3 | tca | |||
| dir | 76 | 8 | aaa | dir | 76 | 6 | ttc | |||
| dir | 74 | 7 | tgc | dir | 77 | 11 | atgj | |||
| dir | 75 | 7 | aac | dir | 77 | 29 | atgi | |||
| dir | 86 | 16 | tta | dir | 77 | 7 | cca | |||
| dir | 76 | 8 | atgf | dir | 77 | 8 | cac | |||
| dir | 75 | 10 | gaa | dir | 76 | 353 | aaa | 19 | ||
| dir | 74 | 6 | gga | comp | 117 | 126 | 5s | |||
| dir | 76 | 6 | gta | comp | 2036 | 582 | 23s' | |||
| dir | 77 | 10 | gac | dir | 1506 | 217 | 16s | |||
| dir | 75 | 15 | aca | dir | 2900 | 126 | 23s | |||
| dir | 85 | 10 | tac | dir | 117 | 216 | 5s | |||
| dir | 84 | 25 | cta | comp | 1185 | 372 | cds | B6 | ||
| dir | 75 | 25 | ggc | dir | 2352 | 21 | cds | anar | ||
| dir | 77 | 10 | aga | dir | 540 | 778 | cds | anara | ||
| dir | 76 | 9 | caa | dir | 1537 | 261 | 16s | |||
| dir | 76 | 3 | aaa | dir | 2899 | 201 | 23s | |||
| dir | 89 | 4 | tca | dir | 117 | 5 | 5s | |||
| dir | 76 | 7 | ttc | dir | 89 | 11 | tta | |||
| dir | 77 | 12 | atgj | dir | 77 | 108 | atgi | |||
| dir | 77 | 18 | atgi | dir | 1508 | 184 | 16s | |||
| dir | 77 | 9 | cac | dir | 645 | 100 | 23s° | |||
| dir | 76 | 8 | aaa | <dir | 259 | 112 | cds | hp | ||
| dir | 74 | 8 | tgc | comp | 2110 | 375 | 23s’ | |||
| dir | 77 | 13 | cgt | comp | 76 | 52 | gca | |||
| dir | 76 | 76 | gta | 43 | comp | 578 | 282 | 16s° | ||
| dir | 414 | 308 | cds | hp | dir | 204 | 12 | cds | hp | |
| dir | 3432 | cds | pyruvate | dir | 1278 | cds | Phagep | |||
| dir | 705 | 281 | cds | CwlD | ||||||
| dir | 977 | 100 | 16s° | |||||||
| dir | 1519 | 126 | 23s° | |||||||
| dir | 117 | 7 | 5s | |||||||
| dir | 75 | 6 | aac | |||||||
| dir | 86 | 15 | tta | |||||||
| dir | 76 | 7 | atgf | |||||||
| dir | 75 | 8 | gaa | |||||||
| dir | 74 | 4 | gga | |||||||
| dir | 76 | 5 | gta | |||||||
| dir | 77 | 10 | gac | |||||||
| dir | 75 | 9 | ggc | |||||||
| dir | 74 | 954 | aga | |||||||
| dir | 840 | 9 | cds | TIGR00159 |
cd153
- chromosome
- Glutl: glutamate--tRNA ligase
- Polyamine: polyamine aminopropyltransferase
- DUF1646: DUF1646 domain-containing protein
- MFS:MFS transporter
- ABC: ABC transporter permease
| cd153 | rRNAs | tRNAs | ||||||
|---|---|---|---|---|---|---|---|---|
| 2*16s23s5s | 666 | 98 | ||||||
| 16s23s5s-gtg-gaa-cgg | ||||||||
| 2*16s23s5s-12aas | ||||||||
| 16s23s5s-13aas | ||||||||
| interc | interc | |||||||
| dir | 463 | cds | Glutl | comp | 333 | cds | MFS | |
| dir | 212 | 16s | comp | 80 | ccg | |||
| dir | 46 | 23s | comp | 6 | ccc | |||
| dir | 58 | 5s | comp | 4 | gcc | |||
| dir | 3 | aac | comp | 8 | cac | |||
| dir | 6 | ggc | comp | 7 | tgg | |||
| dir | 95 | atgj | comp | 5 | cgg | |||
| dir | 5 | ttc | comp | 34 | cgt | |||
| dir | 6 | tac | comp | 5 | acc | |||
| dir | 7 | ggc | comp | 4 | ctg | |||
| dir | 116 | gtc | comp | 47 | ctc | |||
| dir | 5 | gac | comp | 5 | gag | |||
| dir | 3 | ctg | comp | 112 | cag | |||
| dir | 18 | atc | comp | 44 | 5s | |||
| dir | 2 | acg | comp | 281 | 23s | |||
| dir | 145 | tcg | comp | 914 | 16s | |||
| dir | 12 | cds | Polyamine | comp | 12 | cds | ABC | |
| dir | 416 | cds | DUF1646 | |||||
| dir | 280 | 16s | ||||||
| dir | 46 | 23s | ||||||
| dir | 6 | 5s | ||||||
| dir | 5 | aag | ||||||
| dir | 25 | gag | ||||||
| dir | 5 | atgj | ||||||
| dir | 5 | ttc | ||||||
| dir | 6 | tac | ||||||
| dir | 7 | ggc | ||||||
| dir | 31 | gcc | ||||||
| dir | 19 | gtc | ||||||
| dir | 5 | gac | ||||||
| dir | 49 | ctg | ||||||
| dir | 3 | acc | ||||||
| dir | 9 | atc | ||||||
| Dir | 13 | atgf |
cd155
- chromosome
- permease: sulfate permease
- HAMP: HAMP domain-containing protein
- YunB: sporulation protein YunB
- hCyst: 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase
| cd155 | rRNAs | tRNAs | |||
|---|---|---|---|---|---|
| 16atcgca235 | 533 | 48 | |||
| 16s23s5s | |||||
| 16s23s°23s5s | |||||
| 16s23s°23s5s-5s-5s | |||||
| long | interc | ||||
| comp | 1119 | 606 | cds | permease | |
| dir | 1706 | -1607 | 16s | ||
| dir | 104 | 1767 | 23s° | ||
| dir | 3095 | 50 | 23s | ||
| dir | 114 | 602 | 5s | ||
| dir | 3084 | 0 | cds | HAMP | |
| dir | 660 | 232 | cds | YunB | |
| dir | 1656 | -1583 | 16s | ||
| dir | 107 | 1859 | 23s° | ||
| dir | 3267 | 50 | 23s | ||
| dir | 114 | 330 | 5s | ||
| dir | 109 | 557 | 5s | ||
| dir | 109 | 564 | 5s | ||
| dir | 2277 | 0 | cds | hCyst |
cd160
- chromosome
- 16-cds-atcgca-23s16s°5s cds 222 (1er bloc)
- - MRSRKKVVQKRAWQGRQTDGTGGVLMYVEDDMRLADAVRRSFSTTGNPRSIDHLSQDCLAVTSHCSVLRDHSS
- 16-cds-atcgca-23s16s°5s cds 222 (2ème bloc)
- - MRSRKKVVQKRAWQGRQTDGTGGVLMYVEDDMRLADAVRRSFSTTGNPRSIDHLSQDCLAVTSHCSVLRDHSS
- 16s-cds-16s°-23s-cds-5s le 1er cds 222 (3ème bloc)
- - MRSRKKVVQKRAWQGRQTDGTGGVLMYVEDDMRLADAVRRSFSTTGNPRSIDHLSQDCLAVTSHCSVLRDHSS
| cd160 | rRNAs | tRNAs | |||
|---|---|---|---|---|---|
| 16-cds-atcgca-23s16s°5s | 333 | 53 | |||
| 16-cds-atcgca-23s16s°5s | |||||
| 16s-cds-16s°-23s-cds-5s | |||||
| long | interc | ||||
| <comp | 411 | 185 | cds | hp | |
| dir | 1541 | 12 | 16s | ||
| dir | 222 | 207 | cds | hp | |
| dir | 77 | 94 | atc | ||
| dir | 76 | 356 | gca | ||
| dir | 3168 | -2889 | 23s | ||
| dir | 102 | 3026 | 16s° | ||
| dir | 117 | 89 | 5s | ||
| comp | 1143 | 2 | cds | peptidase C45 | |
| long | interc | ||||
| comp | 429 | 185 | cds | hp | |
| dir | 1541 | 12 | 16s | ||
| dir | 222 | 207 | cds | hp | |
| dir | 77 | 94 | atc | ||
| dir | 76 | 186 | gca | ||
| dir | 3166 | -2889 | 23s | ||
| dir | 102 | 3026 | 16s° | ||
| dir | 117 | 336 | 5s | ||
| comp | 549 | 2 | cds | cytochrome c3 | |
| long | interc | ||||
| dir | 1242 | 56 | cds | hp | |
| comp | 117 | 126 | 5s | ||
| dir | 210 | 29 | cds | hp | |
| comp | 3168 | -381 | 23s | ||
| comp | 102 | 761 | 16s° | ||
| comp | 222 | 12 | cds | hp | |
| comp | 1541 | 185 | 16s | ||
| dir | 447 | 0 | cds | hp |
cd161
- chromosome
- PS9: 30S ribosomal protein S9
- tetra: tetratricopeptide repeat protein
- SDR: SDR family oxidoreductase
- DUF1657: DUF1657 domain-containing protein
| cd161 | rRNAs | tRNAs | |||
|---|---|---|---|---|---|
| 2*16s23s5s | 444 | 57 | |||
| 16s-23s°-gca-atc-23s-16s°-5s-6aas | |||||
| 23s°-16s-16s°-23s-5s-aac-ggg | |||||
| long | interc | ||||
| dir | 393 | 324 | cds | PS9 | |
| dir | 1622 | -1554 | 16s | ||
| dir | 106 | 1501 | 23s° | ||
| dir | 76 | 1 | gca | ||
| dir | 77 | 64 | atc | ||
| dir | 3351 | -3087 | 23s | ||
| dir | 86 | 3032 | 16s° | ||
| dir | 152 | 9 | 5s | ||
| dir | 75 | 6 | aac | ||
| dir | 75 | 9 | gaa | ||
| dir | 76 | 25 | atgi | ||
| dir | 77 | 9 | gac | ||
| dir | 76 | 29 | ttc | ||
| dir | 75 | 254 | acg | ||
| dir | 1287 | 8 | cds | tetra | |
| long | interc | ||||
| comp | 738 | 128 | cds | SDR | |
| comp | 75 | 13 | ggg | ||
| comp | 75 | 10 | aac | ||
| comp | 109 | 32 | 5s | ||
| comp | 3731 | -350 | 23s | ||
| comp | 86 | 331 | 16s° | ||
| comp | 1790 | -1696 | 16s | ||
| comp | 447 | 1614 | 23s° | ||
| comp | 264 | 2 | cds | DUF1657 |
cd170
- chromosome
- PS9: 30S ribosomal protein S9
- HlyD: HlyD family efflux transporter periplasmicadaptor subunit
| cd170 | rRNAs | tRNAs | ||
|---|---|---|---|---|
| 3*16s23s5s | 555 | 58 | ||
| 16s23s5s-aac-ggg | ||||
| 16-gcaatc-235-6aas | ||||
| interc | ||||
| dir | 353 | cds | PS9 | |
| dir | 273 | 16s | ||
| dir | 1 | gca | ||
| dir | 74 | atc | ||
| dir | 266 | 23s | ||
| dir | 6 | 5s | ||
| dir | 6 | aac | ||
| dir | 7 | gaa | ||
| dir | 18 | atgi | ||
| dir | 13 | gac | ||
| dir | 269 | ttc | ||
| comp | 186 | acg | ||
| dir | 8 | cds | HlyD |
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